JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC200_chr17_43216420_43233623	0/0	a0002	168	2	2	0	0	0	0	copy fasta	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	a0003	168	2	0	2	0	0	0	copy fasta	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	a0004	168	1	0	1	0	0	0	copy fasta	CCDC200	chr17	43216420	43233623
CCDC200_chr17_43216420_43233623	0/0	a0005	168	1	1	0	0	0	0	copy fasta	CCDC200	chr17	43216420	43233623
CCDC201_chr7_45854994_45878082	1/1	a0001	187	337	90	62	133	14	36	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	a0002	187	93	4	14	65	2	8	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	a0003	188	10	0	7	0	2	1	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	a0004	187	3	0	0	3	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	a0005	161	1	0	1	0	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	a0006	187	1	0	0	0	0	1	copy fasta	CCDC201	chr7	45854994	45878082
CCDC201_chr7_45854994_45878082	0/0	a0007	187	1	0	0	1	0	0	copy fasta	CCDC201	chr7	45854994	45878082
CCDC22_chrX_49230470_49255520	1/1	a0001	627	285	73	47	118	13	32	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	a0002	627	3	3	0	0	0	0	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	a0003	627	1	0	1	0	0	0	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	a0004	95	1	0	0	1	0	0	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	a0005	627	1	1	0	0	0	0	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	a0006	322	1	0	0	1	0	0	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	a0007	627	1	1	0	0	0	0	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	a0008	627	1	0	1	0	0	0	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	a0009	251	1	0	0	1	0	0	copy fasta	CCDC22	chrX	49230470	49255520
CCDC22_chrX_49230470_49255520	0/0	a0010	627	1	0	1	0	0	0	copy fasta	CCDC22	chrX	49230470	49255520
CCDC24_chr1_43986599_44001528	1/1	a0001	307	372	93	67	165	12	33	copy fasta	CCDC24	chr1	43986599	44001528
CCDC24_chr1_43986599_44001528	0/0	a0002	307	32	0	3	26	0	3	copy fasta	CCDC24	chr1	43986599	44001528
CCDC24_chr1_43986599_44001528	0/0	a0003	56	1	0	0	1	0	0	copy fasta	CCDC24	chr1	43986599	44001528
CCDC24_chr1_43986599_44001528	0/0	a0004	307	1	1	0	0	0	0	copy fasta	CCDC24	chr1	43986599	44001528
CCDC25_chr8_27728316_27777640	1/1	a0001	208	368	90	64	164	8	40	copy fasta	CCDC25	chr8	27728316	27777640
CCDC27_chr1_3747450_3776645	1/1	a0001	656	187	13	34	102	10	26	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0002	656	43	4	22	1	8	8	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0003	656	34	6	8	15	0	5	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0004	656	32	22	7	1	0	2	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0005	656	24	3	4	13	0	4	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0006	656	15	0	1	14	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0007	656	15	14	1	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0008	656	10	0	0	10	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0009	656	8	0	0	7	0	1	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0010	656	5	4	1	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0011	656	5	5	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0012	656	4	0	0	4	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0013	656	3	0	0	3	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0014	656	3	3	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0015	656	3	3	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0016	656	3	3	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0017	656	3	1	2	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0018	656	3	3	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0019	656	2	1	1	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0020	656	2	2	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0021	656	2	0	0	0	0	2	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0022	656	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0023	656	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0024	656	1	0	0	1	0	0	copy fasta	CCDC27	chr1	3747450	3776645