JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC27_chr1_3747450_3776645	0/0	a0025	656	1	0	0	1	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0026	656	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0027	656	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0028	656	1	0	0	0	0	1	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0029	656	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0030	656	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0031	656	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0032	656	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0033	146	1	0	0	1	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0034	656	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0035	656	1	0	0	1	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0036	656	1	0	1	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0037	656	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0038	656	1	0	0	0	0	1	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0039	656	1	0	1	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0040	656	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0041	656	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0042	656	1	1	0	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC27_chr1_3747450_3776645	0/0	a0043	656	1	0	1	0	0	0	copy fasta	CCDC27	chr1	3747450	3776645
CCDC28A_chr6_138768769_138798319	1/1	a0001	184	366	96	64	162	10	32	copy fasta	CCDC28A	chr6	138768769	138798319
CCDC28B_chr1_32195595_32210387	0/0	a0000	0	1	0	0	1	0	0	copy fasta	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	1/1	a0001	200	398	87	67	187	13	42	copy fasta	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	a0002	200	14	2	4	5	1	2	copy fasta	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	a0003	200	1	1	0	0	0	0	copy fasta	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	a0004	200	1	0	0	1	0	0	copy fasta	CCDC28B	chr1	32195595	32210387
CCDC28B_chr1_32195595_32210387	0/0	a0005	200	1	0	1	0	0	0	copy fasta	CCDC28B	chr1	32195595	32210387
CCDC30_chr1_42458286_42662190	1/1	a0001	938	256	63	44	107	8	32	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	a0002	938	44	6	10	21	3	4	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	a0003	938	13	7	4	0	0	2	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	a0004	938	3	3	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	a0005	938	2	2	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	a0006	938	1	1	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	a0007	938	1	1	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	a0008	106	1	0	0	1	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	a0009	938	1	0	0	0	1	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	a0010	938	1	0	0	1	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC30_chr1_42458286_42662190	0/0	a0011	938	1	1	0	0	0	0	copy fasta	CCDC30	chr1	42458286	42662190
CCDC32_chr15_40548099_40570042	1/1	a0001	185	328	71	46	170	7	32	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	a0002	185	70	16	20	19	5	10	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	a0003	185	1	0	0	1	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC32_chr15_40548099_40570042	0/0	a0004	185	1	1	0	0	0	0	copy fasta	CCDC32	chr15	40548099	40570042
CCDC33_chr15_74231326_74341141	1/0	a0001	755	119	35	23	47	3	10	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	a0002	755	46	15	6	19	0	6	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	a0003	754	41	11	4	24	2	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/1	a0004	754	22	2	6	2	3	8	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	a0005	755	9	0	0	8	0	1	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	a0006	755	8	0	2	5	0	1	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	a0007	755	5	0	0	3	1	1	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	a0008	755	5	5	0	0	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	a0009	754	4	0	2	2	0	0	copy fasta	CCDC33	chr15	74231326	74341141