JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC33_chr15_74231326_74341141	0/0	a0010	754	3	0	2	0	1	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	a0011	754	3	2	0	0	0	1	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	a0012	755	3	3	0	0	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	a0013	754	2	2	0	0	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	a0014	754	2	0	0	2	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	a0015	754	2	0	0	1	0	1	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	a0016	755	2	2	0	0	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	a0017	755	2	0	0	2	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	a0018	755	2	0	0	1	0	1	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	a0019	754	1	0	0	1	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	a0020	754	1	0	0	0	0	1	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	a0021	755	1	1	0	0	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	a0022	755	1	0	0	1	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	a0023	755	1	1	0	0	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	a0024	755	1	0	1	0	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	a0025	755	1	1	0	0	0	0	copy fasta	CCDC33	chr15	74231326	74341141
CCDC33_chr15_74231326_74341141	0/0	a0026	755	1	0	0	0	0	1	copy fasta	CCDC33	chr15	74231326	74341141
CCDC34_chr11_27333512_27368215	1/1	a0001	373	265	67	33	124	8	31	copy fasta	CCDC34	chr11	27333512	27368215
CCDC34_chr11_27333512_27368215	0/0	a0002	373	59	8	18	19	5	9	copy fasta	CCDC34	chr11	27333512	27368215
CCDC34_chr11_27333512_27368215	0/0	a0003	367	12	11	1	0	0	0	copy fasta	CCDC34	chr11	27333512	27368215
CCDC34_chr11_27333512_27368215	0/0	a0004	373	10	3	6	0	1	0	copy fasta	CCDC34	chr11	27333512	27368215
CCDC34_chr11_27333512_27368215	0/0	a0005	373	7	0	0	7	0	0	copy fasta	CCDC34	chr11	27333512	27368215
CCDC34_chr11_27333512_27368215	0/0	a0006	373	2	2	0	0	0	0	copy fasta	CCDC34	chr11	27333512	27368215
CCDC34_chr11_27333512_27368215	0/0	a0007	379	1	1	0	0	0	0	copy fasta	CCDC34	chr11	27333512	27368215
CCDC34_chr11_27333512_27368215	0/0	a0008	373	1	0	1	0	0	0	copy fasta	CCDC34	chr11	27333512	27368215
CCDC34_chr11_27333512_27368215	0/0	a0009	373	1	0	1	0	0	0	copy fasta	CCDC34	chr11	27333512	27368215
CCDC38_chr12_95862048_95947614	1/0	a0001	563	210	51	44	80	10	24	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/1	a0002	563	101	25	11	55	1	8	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	a0003	563	17	0	6	4	1	6	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	a0004	563	10	10	0	0	0	0	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	a0005	563	4	4	0	0	0	0	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	a0006	563	3	0	0	3	0	0	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	a0007	563	2	1	1	0	0	0	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	a0008	563	2	2	0	0	0	0	copy fasta	CCDC38	chr12	95862048	95947614
CCDC38_chr12_95862048_95947614	0/0	a0009	563	1	1	0	0	0	0	copy fasta	CCDC38	chr12	95862048	95947614
CCDC39_chr3_180609008_180684489	1/1	a0001	941	213	54	45	77	13	22	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	a0002	941	16	15	1	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	a0003	941	6	6	0	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	a0004	941	6	3	3	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	a0005	941	3	3	0	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	a0006	941	2	0	0	0	0	2	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	a0007	941	1	0	1	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	a0008	941	1	1	0	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	a0009	941	1	1	0	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	a0010	941	1	1	0	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	a0011	941	1	0	0	1	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	a0012	941	1	1	0	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	a0013	941	1	1	0	0	0	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC39_chr3_180609008_180684489	0/0	a0014	941	1	0	0	0	1	0	copy fasta	CCDC39	chr3	180609008	180684489
CCDC3_chr10_12891625_13006713	1/1	a0001	270	388	85	80	168	14	39	copy fasta	CCDC3	chr10	12891625	13006713