JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC3_chr10_12891625_13006713	0/0	a0002	270	2	0	0	1	0	1	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	a0003	270	1	1	0	0	0	0	copy fasta	CCDC3	chr10	12891625	13006713
CCDC3_chr10_12891625_13006713	0/0	a0004	270	1	0	0	1	0	0	copy fasta	CCDC3	chr10	12891625	13006713
CCDC40_chr17_80031642_80105613	0/0	a0000	0	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	1/1	a0001	1142	288	50	47	141	12	36	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0002	1142	14	3	6	0	3	2	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0003	1142	12	2	7	0	0	3	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0004	1142	8	1	7	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0005	1142	6	0	0	6	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0006	1142	4	1	3	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0007	1142	4	4	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0008	1142	3	3	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0009	1142	3	3	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0010	1142	2	2	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0011	1142	2	0	0	2	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0012	1142	2	2	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0013	1142	2	2	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0014	1142	2	2	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0015	1142	2	2	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0016	1142	2	2	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0017	1142	1	0	0	0	1	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0018	1142	1	0	0	1	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0019	1142	1	0	0	1	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0020	1142	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0021	1142	1	0	0	1	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0022	1142	1	0	0	1	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0023	1142	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0024	1142	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0025	1142	1	0	0	1	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0026	1142	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0027	1142	1	0	1	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0028	1142	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0029	1142	1	0	0	0	0	1	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0030	1142	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0031	1142	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0032	1142	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0033	1142	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0034	1142	1	1	0	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0035	1142	1	0	0	1	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0036	1142	1	0	1	0	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC40_chr17_80031642_80105613	0/0	a0037	1142	1	0	0	1	0	0	copy fasta	CCDC40	chr17	80031642	80105613
CCDC42_chr17_8724935_8749836	1/1	a0001	316	319	64	70	140	15	28	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	a0002	316	57	5	10	34	1	7	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	a0003	316	21	17	3	0	0	1	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	a0004	316	6	6	0	0	0	0	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	a0005	316	2	0	0	0	0	2	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	a0006	316	1	1	0	0	0	0	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	a0007	316	1	0	1	0	0	0	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	a0008	316	1	1	0	0	0	0	copy fasta	CCDC42	chr17	8724935	8749836
CCDC42_chr17_8724935_8749836	0/0	a0009	316	1	1	0	0	0	0	copy fasta	CCDC42	chr17	8724935	8749836