JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC42_chr17_8724935_8749836	0/0	a0010	316	1	1	0	0	0	0	copy fasta	CCDC42	chr17	8724935	8749836
CCDC43_chr17_44672440_44694776	1/1	a0001	224	359	89	76	148	14	30	copy fasta	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	a0002	224	1	1	0	0	0	0	copy fasta	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	a0003	224	1	1	0	0	0	0	copy fasta	CCDC43	chr17	44672440	44694776
CCDC43_chr17_44672440_44694776	0/0	a0004	224	1	1	0	0	0	0	copy fasta	CCDC43	chr17	44672440	44694776
CCDC47_chr17_63740255_63778597	1/1	a0001	483	350	88	62	148	18	32	copy fasta	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	a0002	483	1	1	0	0	0	0	copy fasta	CCDC47	chr17	63740255	63778597
CCDC47_chr17_63740255_63778597	0/0	a0003	483	1	1	0	0	0	0	copy fasta	CCDC47	chr17	63740255	63778597
CCDC50_chr3_191324394_191403659	0/1	a0001	482	193	61	34	77	4	16	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	1/0	a0002	482	130	10	30	70	3	16	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	a0003	482	61	12	5	37	1	6	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	a0004	482	6	0	3	0	0	3	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	a0005	482	6	0	0	6	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	a0006	482	3	2	1	0	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	a0007	482	2	0	0	0	0	2	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	a0008	482	1	0	0	0	0	1	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	a0009	482	1	0	1	0	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	a0010	262	1	1	0	0	0	0	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	a0011	482	1	0	0	0	0	1	copy fasta	CCDC50	chr3	191324394	191403659
CCDC50_chr3_191324394_191403659	0/0	a0012	482	1	0	0	0	0	1	copy fasta	CCDC50	chr3	191324394	191403659
CCDC51_chr3_48427173_48445119	1/1	a0001	411	373	84	71	157	18	41	copy fasta	CCDC51	chr3	48427173	48445119
CCDC51_chr3_48427173_48445119	0/0	a0002	411	4	0	0	4	0	0	copy fasta	CCDC51	chr3	48427173	48445119
CCDC51_chr3_48427173_48445119	0/0	a0003	411	3	3	0	0	0	0	copy fasta	CCDC51	chr3	48427173	48445119
CCDC51_chr3_48427173_48445119	0/0	a0004	411	2	2	0	0	0	0	copy fasta	CCDC51	chr3	48427173	48445119
CCDC51_chr3_48427173_48445119	0/0	a0005	411	1	0	0	0	0	1	copy fasta	CCDC51	chr3	48427173	48445119
CCDC51_chr3_48427173_48445119	0/0	a0006	411	1	0	0	1	0	0	copy fasta	CCDC51	chr3	48427173	48445119
CCDC51_chr3_48427173_48445119	0/0	a0007	411	1	0	1	0	0	0	copy fasta	CCDC51	chr3	48427173	48445119
CCDC51_chr3_48427173_48445119	0/0	a0008	411	1	1	0	0	0	0	copy fasta	CCDC51	chr3	48427173	48445119
CCDC54_chr3_107372439_107383635	0/0	a0001	328	207	33	32	118	4	20	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	1/1	a0002	328	173	52	45	36	11	27	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	a0003	221	8	0	0	8	0	0	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	a0004	328	2	2	0	0	0	0	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	a0005	328	2	2	0	0	0	0	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	a0006	328	2	1	1	0	0	0	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	a0007	328	1	0	0	0	1	0	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	a0008	328	1	0	0	0	0	1	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	a0009	105	1	1	0	0	0	0	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	a0010	328	1	1	0	0	0	0	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	a0011	328	1	1	0	0	0	0	copy fasta	CCDC54	chr3	107372439	107383635
CCDC54_chr3_107372439_107383635	0/0	a0012	328	1	1	0	0	0	0	copy fasta	CCDC54	chr3	107372439	107383635
CCDC57_chr17_82096470_82217842	0/0	a0001	1027	91	16	19	37	5	14	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/1	a0002	1027	88	27	19	18	6	17	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	a0003	1027	24	10	9	1	1	3	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	a0004	1027	8	8	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	a0005	1027	6	5	1	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	a0006	1027	5	5	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	a0007	1027	4	4	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	a0008	1027	3	0	0	3	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	a0009	1027	3	3	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	a0010	1027	2	0	0	2	0	0	copy fasta	CCDC57	chr17	82096470	82217842