JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC57_chr17_82096470_82217842	0/0	a0011	1027	2	0	0	2	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	a0012	1027	2	2	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	a0013	1027	2	2	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	a0014	1027	1	1	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	a0015	1027	1	0	0	1	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	a0016	1027	1	0	0	1	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	a0017	1027	1	0	1	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	1/0	a0018	1027	1	0	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	a0019	1027	1	0	1	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	a0020	1027	1	0	0	0	0	1	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	a0021	1027	1	1	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	a0022	1027	1	0	0	0	0	1	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	a0023	1027	1	0	0	1	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	a0024	1018	1	1	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC57_chr17_82096470_82217842	0/0	a0025	1027	1	1	0	0	0	0	copy fasta	CCDC57	chr17	82096470	82217842
CCDC59_chr12_82347303_82363387	1/0	a0001	241	334	85	55	142	15	36	copy fasta	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	a0002	241	5	1	2	0	2	0	copy fasta	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	a0003	241	3	0	3	0	0	0	copy fasta	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/1	a0004	241	2	0	0	0	1	0	copy fasta	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	a0005	241	1	1	0	0	0	0	copy fasta	CCDC59	chr12	82347303	82363387
CCDC59_chr12_82347303_82363387	0/0	a0006	241	1	1	0	0	0	0	copy fasta	CCDC59	chr12	82347303	82363387
CCDC60_chr12_119329729_119546040	1/1	a0001	550	158	45	31	56	10	14	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	a0002	550	62	12	22	22	2	4	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	a0003	550	14	1	10	0	3	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	a0004	550	4	3	1	0	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	a0005	550	4	4	0	0	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	a0006	550	4	1	2	0	0	1	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	a0007	550	1	1	0	0	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	a0008	550	1	1	0	0	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	a0009	550	1	1	0	0	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	a0010	550	1	1	0	0	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	a0011	550	1	1	0	0	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	a0012	550	1	1	0	0	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	a0013	519	1	1	0	0	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	a0014	550	1	0	0	0	0	1	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	a0015	550	1	0	0	0	1	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC60_chr12_119329729_119546040	0/0	a0016	550	1	1	0	0	0	0	copy fasta	CCDC60	chr12	119329729	119546040
CCDC61_chr19_45990467_46023616	0/1	a0001	512	250	63	57	94	12	23	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	1/0	a0002	512	116	17	17	64	3	14	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	a0003	512	42	4	7	22	0	9	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	a0004	506	4	4	0	0	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	a0005	506	4	4	0	0	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	a0006	512	2	2	0	0	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	a0007	512	2	0	0	0	1	1	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	a0008	512	1	0	0	1	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	a0009	512	1	0	0	0	0	1	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	a0010	512	1	1	0	0	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	a0011	512	1	0	1	0	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	a0012	512	1	0	0	1	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	a0013	506	1	1	0	0	0	0	copy fasta	CCDC61	chr19	45990467	46023616