JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC61_chr19_45990467_46023616	0/0	a0014	512	1	0	0	1	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC61_chr19_45990467_46023616	0/0	a0015	512	1	0	0	1	0	0	copy fasta	CCDC61	chr19	45990467	46023616
CCDC62_chr12_122769572_122832528	1/1	a0001	684	270	64	49	113	11	31	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	a0002	684	9	8	1	0	0	0	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	a0003	684	7	4	0	0	0	3	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	a0004	684	3	3	0	0	0	0	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	a0005	684	2	2	0	0	0	0	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	a0006	684	1	0	0	0	0	1	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	a0007	292	1	0	0	1	0	0	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	a0008	684	1	1	0	0	0	0	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	a0009	684	1	0	0	1	0	0	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	a0010	684	1	0	0	0	1	0	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	a0011	684	1	0	0	0	0	1	copy fasta	CCDC62	chr12	122769572	122832528
CCDC62_chr12_122769572_122832528	0/0	a0012	684	1	0	0	1	0	0	copy fasta	CCDC62	chr12	122769572	122832528
CCDC63_chr12_110841987_110912535	1/1	a0001	563	264	56	50	104	15	37	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	a0002	563	6	6	0	0	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	a0003	563	3	0	0	3	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	a0004	563	2	2	0	0	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	a0005	563	2	2	0	0	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	a0006	563	2	2	0	0	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	a0007	3	1	0	0	1	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	a0008	563	1	1	0	0	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	a0009	563	1	0	0	0	1	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	a0010	563	1	1	0	0	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	a0011	563	1	0	1	0	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	a0012	563	1	0	0	0	0	1	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	a0013	563	1	0	1	0	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	a0014	563	1	1	0	0	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC63_chr12_110841987_110912535	0/0	a0015	563	1	1	0	0	0	0	copy fasta	CCDC63	chr12	110841987	110912535
CCDC65_chr12_48899133_48926576	1/1	a0001	484	235	73	34	86	9	31	copy fasta	CCDC65	chr12	48899133	48926576
CCDC65_chr12_48899133_48926576	0/0	a0002	484	120	8	31	67	3	11	copy fasta	CCDC65	chr12	48899133	48926576
CCDC65_chr12_48899133_48926576	0/0	a0003	484	11	10	1	0	0	0	copy fasta	CCDC65	chr12	48899133	48926576
CCDC65_chr12_48899133_48926576	0/0	a0004	484	6	1	4	0	0	1	copy fasta	CCDC65	chr12	48899133	48926576
CCDC65_chr12_48899133_48926576	0/0	a0005	484	1	0	0	0	0	1	copy fasta	CCDC65	chr12	48899133	48926576
CCDC65_chr12_48899133_48926576	0/0	a0006	484	1	0	1	0	0	0	copy fasta	CCDC65	chr12	48899133	48926576
CCDC65_chr12_48899133_48926576	0/0	a0007	484	1	0	0	1	0	0	copy fasta	CCDC65	chr12	48899133	48926576
CCDC65_chr12_48899133_48926576	0/0	a0008	484	1	0	1	0	0	0	copy fasta	CCDC65	chr12	48899133	48926576
CCDC66_chr3_56552175_56626837	0/1	a0001	4	209	46	31	97	12	22	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	a0002	949	93	12	10	55	0	16	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	a0003	949	29	9	2	17	0	1	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	a0004	949	20	17	3	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	a0005	949	10	0	4	6	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	a0006	949	2	2	0	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	a0007	949	2	2	0	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	a0008	949	2	0	0	0	0	2	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	1/0	a0009	948	1	0	0	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	a0010	949	1	1	0	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	a0011	949	1	0	0	1	0	0	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	a0012	949	1	0	0	0	0	1	copy fasta	CCDC66	chr3	56552175	56626837
CCDC66_chr3_56552175_56626837	0/0	a0013	949	1	1	0	0	0	0	copy fasta	CCDC66	chr3	56552175	56626837