Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ACSM2A_chr16_20446521_20492669	0/0	a0012	577	2	0	0	2	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	a0013	577	1	0	0	1	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	a0014	69	1	0	0	1	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	a0015	577	1	0	0	0	0	1	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	a0016	577	1	0	0	0	0	1	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	a0017	577	1	0	1	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	a0018	577	1	0	0	1	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	a0019	577	1	0	0	1	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	a0020	577	1	1	0	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2A_chr16_20446521_20492669	0/0	a0021	577	1	1	0	0	0	0	copy fasta	ACSM2A	chr16	20446521	20492669
ACSM2B_chr16_20531226_20581367	0/1	a0001	577	253	25	59	124	12	32	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	a0002	577	53	14	4	30	0	5	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	a0003	577	22	18	1	0	0	3	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	a0004	577	19	17	2	0	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	1/0	a0005	577	11	6	2	0	0	2	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	a0006	577	10	10	0	0	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	a0007	577	4	0	0	4	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	a0008	577	4	4	0	0	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	a0009	577	3	0	0	0	0	3	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	a0010	577	2	2	0	0	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	a0011	577	2	0	0	1	0	1	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	a0012	577	1	0	0	1	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	a0013	577	1	0	0	1	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	a0014	577	1	1	0	0	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	a0015	577	1	0	0	1	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM2B_chr16_20531226_20581367	0/0	a0016	577	1	1	0	0	0	0	copy fasta	ACSM2B	chr16	20531226	20581367
ACSM3_chr16_20759014_20802581	1/1	a0001	586	286	72	52	112	12	36	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	a0002	586	40	1	3	32	0	4	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	a0003	586	13	13	0	0	0	0	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	a0004	291	4	4	0	0	0	0	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	a0005	586	3	0	0	3	0	0	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	a0006	586	2	0	0	0	0	2	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	a0007	586	2	2	0	0	0	0	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	a0008	586	1	0	0	1	0	0	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	a0009	330	1	0	1	0	0	0	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	a0010	440	1	0	1	0	0	0	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	a0011	586	1	0	0	1	0	0	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	a0012	586	1	0	0	1	0	0	copy fasta	ACSM3	chr16	20759014	20802581
ACSM3_chr16_20759014_20802581	0/0	a0013	586	1	0	1	0	0	0	copy fasta	ACSM3	chr16	20759014	20802581
ACSM4_chr12_7299072_7333719	1/1	a0001	580	390	76	70	180	18	44	copy fasta	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	0/0	a0002	580	16	14	2	0	0	0	copy fasta	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	0/0	a0003	356	13	6	2	5	0	0	copy fasta	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	0/0	a0004	580	3	0	0	3	0	0	copy fasta	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	0/0	a0005	580	3	0	0	3	0	0	copy fasta	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	0/0	a0006	580	1	0	0	1	0	0	copy fasta	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	0/0	a0007	580	1	0	0	1	0	0	copy fasta	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	0/0	a0008	580	1	0	0	1	0	0	copy fasta	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	0/0	a0009	580	1	0	0	0	0	1	copy fasta	ACSM4	chr12	7299072	7333719
ACSM4_chr12_7299072_7333719	0/0	a0010	580	1	0	0	0	0	1	copy fasta	ACSM4	chr12	7299072	7333719
ACSM5_chr16_20404534_20446336	0/0	a0000	0	1	0	0	0	1	0	copy fasta	ACSM5	chr16	20404534	20446336