JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC74A_chr2_131522888_131538666	0/0	a0008	312	2	2	0	0	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	a0009	312	1	0	0	1	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	a0010	164	1	1	0	0	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	a0011	312	1	1	0	0	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	a0012	312	1	0	0	1	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	a0013	312	1	0	0	1	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74A_chr2_131522888_131538666	0/0	a0014	312	1	0	1	0	0	0	copy fasta	CCDC74A	chr2	131522888	131538666
CCDC74B_chr2_130134287_130150112	1/0	a0001	314	205	32	30	107	5	30	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	a0002	314	147	27	33	66	8	13	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/1	a0003	314	28	1	13	6	4	3	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	a0004	314	16	16	0	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	a0005	314	16	12	3	0	1	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	a0006	314	11	10	1	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	a0007	314	6	0	0	6	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	a0008	314	5	0	0	5	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	a0009	314	3	0	0	2	0	1	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	a0010	314	2	0	0	2	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	a0011	314	2	0	0	2	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	a0012	314	1	0	1	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	a0013	314	1	1	0	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	a0014	314	1	0	1	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	a0015	314	1	0	0	1	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	a0016	272	1	0	0	1	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	a0017	314	1	0	0	1	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	a0018	314	1	1	0	0	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	a0019	314	1	0	0	1	0	0	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC74B_chr2_130134287_130150112	0/0	a0020	314	1	0	0	0	0	1	copy fasta	CCDC74B	chr2	130134287	130150112
CCDC77_chr12_396644_447642	1/0	a0001	488	205	30	47	93	7	27	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	a0002	488	103	20	21	45	2	15	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	a0003	488	78	20	4	51	0	3	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/1	a0004	488	28	8	5	8	3	3	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	a0005	488	7	7	0	0	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	a0006	456	4	4	0	0	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	a0007	488	3	3	0	0	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	a0008	13	1	0	1	0	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	a0009	133	1	0	0	1	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	a0010	488	1	0	0	1	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC77_chr12_396644_447642	0/0	a0011	488	1	0	0	1	0	0	copy fasta	CCDC77	chr12	396644	447642
CCDC78_chr16_717582_731443	0/1	a0001	470	277	64	49	117	7	39	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	1/0	a0002	470	91	19	25	36	5	5	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	a0003	470	3	3	0	0	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	a0004	470	3	3	0	0	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	a0005	470	2	2	0	0	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	a0006	470	2	0	0	0	0	2	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	a0007	470	2	0	0	0	0	2	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	a0008	470	2	1	1	0	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	a0009	470	1	0	0	1	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	a0010	470	1	1	0	0	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	a0011	470	1	0	1	0	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	a0012	470	1	1	0	0	0	0	copy fasta	CCDC78	chr16	717582	731443