JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC78_chr16_717582_731443	0/0	a0013	470	1	1	0	0	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	a0014	470	1	0	0	1	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	a0015	411	1	0	0	1	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC78_chr16_717582_731443	0/0	a0016	470	1	1	0	0	0	0	copy fasta	CCDC78	chr16	717582	731443
CCDC7_chr10_32441140_32887864	0/0	a0001	1385	190	31	24	112	7	16	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	a0002	1385	51	1	15	20	4	11	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	a0003	1385	49	0	11	26	1	11	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	a0004	1385	19	16	3	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	a0005	1385	15	12	3	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	a0006	1385	8	6	1	1	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	1/0	a0007	1385	7	6	0	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	a0008	1385	5	4	1	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/1	a0009	1256	5	1	0	0	2	1	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	a0010	1385	3	2	1	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	a0011	230	2	0	0	2	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	a0012	1385	2	2	0	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	a0013	1385	2	2	0	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	a0014	1385	1	0	0	1	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	a0015	1385	1	0	0	1	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	a0016	1385	1	1	0	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	a0017	1200	1	1	0	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	a0018	1385	1	0	0	1	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	a0019	1385	1	0	1	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	a0020	1385	1	0	0	1	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	a0021	1385	1	1	0	0	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	a0022	1385	1	0	0	1	0	0	copy fasta	CCDC7	chr10	32441140	32887864
CCDC7_chr10_32441140_32887864	0/0	a0023	1385	1	0	0	0	0	1	copy fasta	CCDC7	chr10	32441140	32887864
CCDC80_chr3_112591797_112646143	1/1	a0001	950	340	69	64	164	10	31	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	a0002	950	13	13	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	a0003	950	9	5	1	0	0	3	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	a0004	950	2	2	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	a0005	950	2	0	0	0	0	2	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	a0006	950	2	2	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	a0007	950	2	0	0	2	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	a0008	950	2	0	0	2	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	a0009	950	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	a0010	950	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	a0011	950	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	a0012	950	1	0	1	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	a0013	950	1	0	1	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	a0014	950	1	1	0	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	a0015	950	1	0	0	1	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC80_chr3_112591797_112646143	0/0	a0016	950	1	0	1	0	0	0	copy fasta	CCDC80	chr3	112591797	112646143
CCDC81_chr11_86369887_86428106	1/1	a0001	652	355	66	69	171	9	38	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	a0002	652	19	0	2	13	2	2	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	a0003	652	13	10	0	1	1	1	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	a0004	652	7	7	0	0	0	0	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	a0005	652	6	1	1	0	0	4	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	a0006	652	2	2	0	0	0	0	copy fasta	CCDC81	chr11	86369887	86428106
CCDC81_chr11_86369887_86428106	0/0	a0007	652	1	0	0	0	0	1	copy fasta	CCDC81	chr11	86369887	86428106