JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC81_chr11_86369887_86428106	0/0	a0008	652	1	0	0	1	0	0	copy fasta	CCDC81	chr11	86369887	86428106
CCDC82_chr11_96347773_96394912	1/1	a0001	544	261	65	49	106	9	30	copy fasta	CCDC82	chr11	96347773	96394912
CCDC82_chr11_96347773_96394912	0/0	a0002	544	107	20	15	56	7	9	copy fasta	CCDC82	chr11	96347773	96394912
CCDC82_chr11_96347773_96394912	0/0	a0003	544	6	6	0	0	0	0	copy fasta	CCDC82	chr11	96347773	96394912
CCDC82_chr11_96347773_96394912	0/0	a0004	544	2	0	0	0	0	2	copy fasta	CCDC82	chr11	96347773	96394912
CCDC82_chr11_96347773_96394912	0/0	a0005	544	2	0	0	2	0	0	copy fasta	CCDC82	chr11	96347773	96394912
CCDC82_chr11_96347773_96394912	0/0	a0006	544	1	0	0	1	0	0	copy fasta	CCDC82	chr11	96347773	96394912
CCDC82_chr11_96347773_96394912	0/0	a0007	544	1	1	0	0	0	0	copy fasta	CCDC82	chr11	96347773	96394912
CCDC82_chr11_96347773_96394912	0/0	a0008	544	1	0	0	1	0	0	copy fasta	CCDC82	chr11	96347773	96394912
CCDC82_chr11_96347773_96394912	0/0	a0009	544	1	0	0	0	0	1	copy fasta	CCDC82	chr11	96347773	96394912
CCDC83_chr11_85850383_85925013	1/1	a0001	413	295	94	48	115	7	29	copy fasta	CCDC83	chr11	85850383	85925013
CCDC83_chr11_85850383_85925013	0/0	a0002	413	24	0	5	14	1	4	copy fasta	CCDC83	chr11	85850383	85925013
CCDC83_chr11_85850383_85925013	0/0	a0003	413	7	0	2	3	0	2	copy fasta	CCDC83	chr11	85850383	85925013
CCDC83_chr11_85850383_85925013	0/0	a0004	413	4	0	0	3	0	1	copy fasta	CCDC83	chr11	85850383	85925013
CCDC83_chr11_85850383_85925013	0/0	a0005	413	2	0	0	2	0	0	copy fasta	CCDC83	chr11	85850383	85925013
CCDC83_chr11_85850383_85925013	0/0	a0006	413	1	0	1	0	0	0	copy fasta	CCDC83	chr11	85850383	85925013
CCDC83_chr11_85850383_85925013	0/0	a0007	413	1	0	0	1	0	0	copy fasta	CCDC83	chr11	85850383	85925013
CCDC85A_chr2_56178990_56391172	0/0	a0001	553	184	29	43	83	6	23	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	1/1	a0002	553	72	41	7	15	2	5	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	a0003	553	45	6	2	29	0	8	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	a0004	553	3	2	1	0	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	a0005	553	2	2	0	0	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	a0006	553	1	0	0	1	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85A_chr2_56178990_56391172	0/0	a0007	553	1	0	1	0	0	0	copy fasta	CCDC85A	chr2	56178990	56391172
CCDC85B_chr11_65885673_65896635	1/1	a0001	202	423	91	75	197	12	46	copy fasta	CCDC85B	chr11	65885673	65896635
CCDC85B_chr11_65885673_65896635	0/0	a0002	202	3	2	1	0	0	0	copy fasta	CCDC85B	chr11	65885673	65896635
CCDC85B_chr11_65885673_65896635	0/0	a0003	202	1	0	0	1	0	0	copy fasta	CCDC85B	chr11	65885673	65896635
CCDC85B_chr11_65885673_65896635	0/0	a0004	202	1	1	0	0	0	0	copy fasta	CCDC85B	chr11	65885673	65896635
CCDC85C_chr14_99495190_99609207	1/1	a0001	419	273	68	51	105	18	29	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	a0002	419	20	20	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	a0003	419	2	0	1	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	a0004	419	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	a0005	419	1	1	0	0	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	a0006	419	1	0	0	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	a0007	419	1	0	0	0	0	1	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC85C_chr14_99495190_99609207	0/0	a0008	419	1	0	0	1	0	0	copy fasta	CCDC85C	chr14	99495190	99609207
CCDC86_chr11_60837113_60856081	1/1	a0001	360	361	88	66	150	16	39	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/0	a0002	360	32	5	8	16	2	1	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/0	a0003	360	3	0	0	3	0	0	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/0	a0004	360	1	1	0	0	0	0	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/0	a0005	360	1	1	0	0	0	0	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/0	a0006	360	1	0	0	1	0	0	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/0	a0007	360	1	0	1	0	0	0	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/0	a0008	360	1	0	1	0	0	0	copy fasta	CCDC86	chr11	60837113	60856081
CCDC86_chr11_60837113_60856081	0/0	a0009	360	1	1	0	0	0	0	copy fasta	CCDC86	chr11	60837113	60856081
CCDC87_chr11_66585176_66598063	1/1	a0001	849	377	83	60	180	12	40	copy fasta	CCDC87	chr11	66585176	66598063
CCDC87_chr11_66585176_66598063	0/0	a0002	849	2	0	0	2	0	0	copy fasta	CCDC87	chr11	66585176	66598063
CCDC87_chr11_66585176_66598063	0/0	a0003	849	2	1	0	0	0	1	copy fasta	CCDC87	chr11	66585176	66598063
CCDC87_chr11_66585176_66598063	0/0	a0004	849	1	0	0	1	0	0	copy fasta	CCDC87	chr11	66585176	66598063
CCDC87_chr11_66585176_66598063	0/0	a0005	849	1	1	0	0	0	0	copy fasta	CCDC87	chr11	66585176	66598063