JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC87_chr11_66585176_66598063	0/0	a0006	849	1	0	0	0	0	1	copy fasta	CCDC87	chr11	66585176	66598063
CCDC87_chr11_66585176_66598063	0/0	a0007	849	1	1	0	0	0	0	copy fasta	CCDC87	chr11	66585176	66598063
CCDC87_chr11_66585176_66598063	0/0	a0008	849	1	0	0	1	0	0	copy fasta	CCDC87	chr11	66585176	66598063
CCDC88A_chr2_55282842_55424856	1/1	a0001	1871	294	74	39	140	9	30	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	a0002	1871	9	0	0	9	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	a0003	1871	6	0	3	0	3	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	a0004	1871	2	0	0	2	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	a0005	1871	1	1	0	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	a0006	1871	1	1	0	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	a0007	1785	1	1	0	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	a0008	1871	1	1	0	0	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88A_chr2_55282842_55424856	0/0	a0009	1871	1	0	0	1	0	0	copy fasta	CCDC88A	chr2	55282842	55424856
CCDC88B_chr11_64335204_64362534	0/0	a0001	1476	153	37	30	74	5	7	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0002	1476	125	23	22	55	6	19	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/1	a0003	1476	48	6	10	16	3	12	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	1/0	a0004	1476	15	13	1	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0005	1476	6	5	1	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0006	1476	5	1	0	4	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0007	1476	4	0	0	4	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0008	1476	4	0	2	0	0	2	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0009	1476	4	0	0	4	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0010	1476	4	4	0	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0011	1476	2	0	2	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0012	1476	2	0	0	0	2	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0013	1476	2	0	0	0	0	2	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0014	1476	2	1	1	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0015	1476	2	1	1	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0016	1476	1	0	0	1	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0017	1476	1	1	0	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0018	1476	1	0	0	1	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0019	1476	1	0	0	1	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0020	1476	1	0	0	0	0	1	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0021	1476	1	0	1	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0022	1476	1	0	0	0	0	1	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0023	1476	1	0	0	0	0	1	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0024	1476	1	0	0	1	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0025	1476	1	0	0	1	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0026	1476	1	0	0	1	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0027	1476	1	1	0	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0028	1476	1	1	0	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0029	1476	1	1	0	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0030	1476	1	0	1	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0031	1476	1	0	0	1	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0032	1476	1	0	0	1	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0033	1476	1	0	1	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0034	1476	1	0	0	1	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0035	1476	1	0	0	0	0	1	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0036	1476	1	1	0	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88B_chr11_64335204_64362534	0/0	a0037	1476	1	0	1	0	0	0	copy fasta	CCDC88B	chr11	64335204	64362534
CCDC88C_chr14_91266323_91422820	0/0	a0001	2028	149	51	41	33	9	15	copy fasta	CCDC88C	chr14	91266323	91422820