JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC88C_chr14_91266323_91422820	0/1	a0002	2028	46	6	10	23	1	5	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	1/0	a0003	2028	34	0	2	21	0	10	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0004	2028	9	0	1	8	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0005	2028	7	7	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0006	2028	5	5	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0007	2028	3	0	2	0	0	1	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0008	2028	3	0	0	3	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0009	2028	2	2	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0010	2028	2	2	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0011	2028	2	0	0	2	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0012	2028	2	2	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0013	2028	2	2	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0014	2028	2	0	2	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0015	2028	2	0	0	0	0	2	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0016	2028	1	0	0	0	0	1	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0017	2028	1	1	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0018	2028	1	0	0	0	0	1	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0019	2028	1	1	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0020	2028	1	1	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0021	2028	1	0	1	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0022	2028	1	0	0	0	0	1	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0023	2028	1	0	0	0	0	1	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0024	2028	1	0	1	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0025	2028	1	1	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0026	2028	1	1	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0027	2028	1	0	0	0	0	1	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0028	2028	1	1	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC88C_chr14_91266323_91422820	0/0	a0029	2028	1	1	0	0	0	0	copy fasta	CCDC88C	chr14	91266323	91422820
CCDC89_chr11_85678848_85691195	1/1	a0001	374	446	90	75	215	18	46	copy fasta	CCDC89	chr11	85678848	85691195
CCDC89_chr11_85678848_85691195	0/0	a0002	374	3	0	0	3	0	0	copy fasta	CCDC89	chr11	85678848	85691195
CCDC89_chr11_85678848_85691195	0/0	a0003	374	2	0	0	2	0	0	copy fasta	CCDC89	chr11	85678848	85691195
CCDC89_chr11_85678848_85691195	0/0	a0004	374	1	1	0	0	0	0	copy fasta	CCDC89	chr11	85678848	85691195
CCDC89_chr11_85678848_85691195	0/0	a0005	374	1	0	1	0	0	0	copy fasta	CCDC89	chr11	85678848	85691195
CCDC89_chr11_85678848_85691195	0/0	a0006	374	1	1	0	0	0	0	copy fasta	CCDC89	chr11	85678848	85691195
CCDC8_chr19_46405329_46418564	1/1	a0001	538	251	62	64	90	14	19	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	a0002	538	125	16	13	71	2	23	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	a0003	538	40	3	1	30	2	4	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	a0004	538	14	11	3	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	a0005	538	6	0	0	6	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	a0006	538	6	0	0	6	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	a0007	538	4	0	0	1	0	3	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	a0008	538	3	3	0	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	a0009	538	2	2	0	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	a0010	538	1	0	0	1	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	a0011	538	1	1	0	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	a0012	538	1	0	1	0	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	a0013	538	1	0	0	1	0	0	copy fasta	CCDC8	chr19	46405329	46418564
CCDC8_chr19_46405329_46418564	0/0	a0014	538	1	0	0	0	0	1	copy fasta	CCDC8	chr19	46405329	46418564
CCDC90B_chr11_83254081_83291367	0/1	a0001	254	270	89	38	106	8	28	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	1/0	a0002	254	141	5	30	87	6	12	copy fasta	CCDC90B	chr11	83254081	83291367