JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC90B_chr11_83254081_83291367	0/0	a0003	254	2	0	2	0	0	0	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC90B_chr11_83254081_83291367	0/0	a0004	254	1	0	0	1	0	0	copy fasta	CCDC90B	chr11	83254081	83291367
CCDC91_chr12_28185456_28555166	0/0	a0001	441	85	18	18	35	4	10	copy fasta	CCDC91	chr12	28185456	28555166
CCDC91_chr12_28185456_28555166	1/0	a0002	441	81	9	17	40	4	10	copy fasta	CCDC91	chr12	28185456	28555166
CCDC91_chr12_28185456_28555166	0/1	a0003	441	35	2	7	17	4	4	copy fasta	CCDC91	chr12	28185456	28555166
CCDC91_chr12_28185456_28555166	0/0	a0004	441	23	17	6	0	0	0	copy fasta	CCDC91	chr12	28185456	28555166
CCDC91_chr12_28185456_28555166	0/0	a0005	441	8	8	0	0	0	0	copy fasta	CCDC91	chr12	28185456	28555166
CCDC91_chr12_28185456_28555166	0/0	a0006	441	5	4	1	0	0	0	copy fasta	CCDC91	chr12	28185456	28555166
CCDC91_chr12_28185456_28555166	0/0	a0007	441	3	3	0	0	0	0	copy fasta	CCDC91	chr12	28185456	28555166
CCDC91_chr12_28185456_28555166	0/0	a0008	441	1	1	0	0	0	0	copy fasta	CCDC91	chr12	28185456	28555166
CCDC91_chr12_28185456_28555166	0/0	a0009	441	1	0	1	0	0	0	copy fasta	CCDC91	chr12	28185456	28555166
CCDC92B_chr17_2715801_2754652	1/1	a0001	255	240	77	31	93	11	26	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	a0002	255	176	3	53	91	7	22	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	a0003	255	1	0	0	1	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92B_chr17_2715801_2754652	0/0	a0004	255	1	0	0	1	0	0	copy fasta	CCDC92B	chr17	2715801	2754652
CCDC92_chr12_123930626_123977831	1/1	a0001	331	157	55	34	34	5	27	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	a0002	331	83	31	21	21	5	5	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	a0003	331	4	4	0	0	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	a0004	331	3	2	1	0	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	a0005	331	2	0	2	0	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC92_chr12_123930626_123977831	0/0	a0006	331	1	0	0	1	0	0	copy fasta	CCDC92	chr12	123930626	123977831
CCDC93_chr2_117910481_118019070	1/0	a0001	631	288	67	56	122	7	35	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/1	a0002	631	20	8	8	0	2	1	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	a0003	631	5	5	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	a0004	631	4	0	0	0	0	4	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	a0005	631	2	2	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	a0006	631	1	1	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	a0007	631	1	0	0	0	1	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC93_chr2_117910481_118019070	0/0	a0008	631	1	1	0	0	0	0	copy fasta	CCDC93	chr2	117910481	118019070
CCDC96_chr4_7035849_7048001	1/1	a0001	555	224	68	45	82	6	21	copy fasta	CCDC96	chr4	7035849	7048001
CCDC96_chr4_7035849_7048001	0/0	a0002	555	195	27	32	103	10	23	copy fasta	CCDC96	chr4	7035849	7048001
CCDC96_chr4_7035849_7048001	0/0	a0003	555	5	3	2	0	0	0	copy fasta	CCDC96	chr4	7035849	7048001
CCDC96_chr4_7035849_7048001	0/0	a0004	555	2	0	0	2	0	0	copy fasta	CCDC96	chr4	7035849	7048001
CCDC96_chr4_7035849_7048001	0/0	a0005	555	2	0	0	0	0	2	copy fasta	CCDC96	chr4	7035849	7048001
CCDC96_chr4_7035849_7048001	0/0	a0006	555	2	0	2	0	0	0	copy fasta	CCDC96	chr4	7035849	7048001
CCDC96_chr4_7035849_7048001	0/0	a0007	555	1	0	0	1	0	0	copy fasta	CCDC96	chr4	7035849	7048001
CCDC96_chr4_7035849_7048001	0/0	a0008	555	1	0	1	0	0	0	copy fasta	CCDC96	chr4	7035849	7048001
CCDC97_chr19_41305172_41329873	1/1	a0001	343	351	93	70	130	12	44	copy fasta	CCDC97	chr19	41305172	41329873
CCDC97_chr19_41305172_41329873	0/0	a0002	343	1	1	0	0	0	0	copy fasta	CCDC97	chr19	41305172	41329873
CCDC9B_chr15_40326452_40345939	1/1	a0001	490	387	79	62	182	16	46	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	a0002	490	15	14	1	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	a0003	490	10	1	6	0	2	1	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	a0004	490	2	0	0	2	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	a0005	490	1	0	0	1	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	a0006	490	1	0	0	1	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	a0007	334	1	0	1	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	a0008	490	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	a0009	490	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	a0010	490	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9B_chr15_40326452_40345939	0/0	a0011	490	1	0	0	0	0	1	copy fasta	CCDC9B	chr15	40326452	40345939