JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCDC9B_chr15_40326452_40345939	0/0	a0012	490	1	1	0	0	0	0	copy fasta	CCDC9B	chr15	40326452	40345939
CCDC9_chr19_47251525_47276953	0/1	a0001	531	172	23	31	88	8	21	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	1/0	a0002	531	129	13	28	64	7	16	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	a0003	530	39	4	13	13	1	8	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	a0004	531	37	34	3	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	a0005	531	18	18	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	a0006	531	2	0	0	2	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	a0007	531	1	0	1	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	a0008	531	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	a0009	531	1	0	0	0	0	1	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	a0010	531	1	1	0	0	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCDC9_chr19_47251525_47276953	0/0	a0011	531	1	0	0	1	0	0	copy fasta	CCDC9	chr19	47251525	47276953
CCER1_chr12_90947215_90960176	1/1	a0001	406	372	83	64	176	10	37	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	a0002	406	14	13	1	0	0	0	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	a0003	399	11	0	2	9	0	0	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	a0004	406	3	0	0	0	0	3	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	a0005	406	1	0	0	1	0	0	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	a0006	406	1	1	0	0	0	0	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	a0007	406	1	0	1	0	0	0	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	a0008	406	1	0	0	1	0	0	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	a0009	406	1	1	0	0	0	0	copy fasta	CCER1	chr12	90947215	90960176
CCER1_chr12_90947215_90960176	0/0	a0010	406	1	0	0	1	0	0	copy fasta	CCER1	chr12	90947215	90960176
CCER2_chr19_38903980_38917186	1/1	a0001	266	333	85	66	134	14	32	copy fasta	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	a0002	266	108	10	12	70	4	12	copy fasta	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	a0003	266	2	0	0	0	0	2	copy fasta	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	a0004	266	1	0	1	0	0	0	copy fasta	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	a0005	266	1	0	1	0	0	0	copy fasta	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	a0006	266	1	0	0	1	0	0	copy fasta	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	a0007	266	1	1	0	0	0	0	copy fasta	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	a0008	266	1	1	0	0	0	0	copy fasta	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	a0009	266	1	0	0	1	0	0	copy fasta	CCER2	chr19	38903980	38917186
CCER2_chr19_38903980_38917186	0/0	a0010	266	1	1	0	0	0	0	copy fasta	CCER2	chr19	38903980	38917186
CCHCR1_chr6_31137439_31162802	0/1	a0001	77	187	35	45	67	12	27	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	a0002	871	93	21	24	33	4	11	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	a0003	871	37	8	0	28	0	1	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	a0004	871	36	8	2	21	0	5	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	a0005	871	30	12	1	15	1	1	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	a0006	871	27	0	1	25	0	1	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	a0007	40	23	7	8	7	0	1	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	a0008	871	14	0	0	14	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	a0009	871	2	2	0	0	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	a0010	871	2	0	1	0	0	1	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	a0011	799	1	0	0	1	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	a0012	871	1	0	0	1	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	a0013	871	1	1	0	0	0	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCHCR1_chr6_31137439_31162802	0/0	a0014	871	1	0	0	0	1	0	copy fasta	CCHCR1	chr6	31137439	31162802
CCIN_chr9_36164388_36176334	1/1	a0001	588	375	89	68	165	9	42	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	a0002	588	29	0	0	26	3	0	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	a0003	588	10	4	2	0	1	3	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	a0004	588	4	0	2	0	2	0	copy fasta	CCIN	chr9	36164388	36176334