JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCIN_chr9_36164388_36176334	0/0	a0005	588	1	1	0	0	0	0	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	a0006	588	1	0	0	0	0	1	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	a0007	588	1	0	0	1	0	0	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	a0008	588	1	0	0	1	0	0	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	a0009	588	1	0	0	1	0	0	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	a0010	588	1	0	0	0	1	0	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	a0011	588	1	0	0	1	0	0	copy fasta	CCIN	chr9	36164388	36176334
CCIN_chr9_36164388_36176334	0/0	a0012	588	1	0	0	1	0	0	copy fasta	CCIN	chr9	36164388	36176334
CCKAR_chr4_26476396_26495484	1/1	a0001	428	429	89	74	205	16	43	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	a0002	428	11	0	0	11	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	a0003	428	5	5	0	0	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	a0004	428	2	2	0	0	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	a0005	428	2	0	0	2	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	a0006	428	1	0	0	1	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	a0007	428	1	1	0	0	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	a0008	428	1	0	0	0	0	1	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	a0009	428	1	0	0	1	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKAR_chr4_26476396_26495484	0/0	a0010	428	1	1	0	0	0	0	copy fasta	CCKAR	chr4	26476396	26495484
CCKBR_chr11_6254838_6277127	1/1	a0001	447	385	85	72	168	18	40	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	a0002	447	28	7	5	13	0	3	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	a0003	447	6	0	0	6	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	a0004	447	3	0	0	3	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	a0005	447	1	0	0	1	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	a0006	447	1	0	0	1	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	a0007	447	1	0	1	0	0	0	copy fasta	CCKBR	chr11	6254838	6277127
CCKBR_chr11_6254838_6277127	0/0	a0008	447	1	0	0	0	0	1	copy fasta	CCKBR	chr11	6254838	6277127
CCK_chr3_42252826_42271185	1/1	a0001	115	426	98	86	184	18	38	copy fasta	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	a0002	115	3	0	0	3	0	0	copy fasta	CCK	chr3	42252826	42271185
CCK_chr3_42252826_42271185	0/0	a0003	115	1	0	0	1	0	0	copy fasta	CCK	chr3	42252826	42271185
CCL11_chr17_34280742_34293334	1/1	a0001	97	373	73	70	178	14	36	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	a0002	97	68	11	9	38	2	8	copy fasta	CCL11	chr17	34280742	34293334
CCL11_chr17_34280742_34293334	0/0	a0003	97	7	6	1	0	0	0	copy fasta	CCL11	chr17	34280742	34293334
CCL13_chr17_34351480_34363610	0/0	a0000	0	1	0	0	0	1	0	copy fasta	CCL13	chr17	34351480	34363610
CCL13_chr17_34351480_34363610	1/1	a0001	98	442	87	78	214	13	48	copy fasta	CCL13	chr17	34351480	34363610
CCL13_chr17_34351480_34363610	0/0	a0002	98	2	2	0	0	0	0	copy fasta	CCL13	chr17	34351480	34363610
CCL13_chr17_34351480_34363610	0/0	a0003	98	1	1	0	0	0	0	copy fasta	CCL13	chr17	34351480	34363610
CCL14_chr17_35978288_35991729	0/1	a0001	93	413	78	74	198	15	47	copy fasta	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	a0002	93	21	17	2	0	1	1	copy fasta	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	a0003	93	10	2	4	4	0	0	copy fasta	CCL14	chr17	35978288	35991729
CCL14_chr17_35978288_35991729	0/0	a0004	93	1	1	0	0	0	0	copy fasta	CCL14	chr17	35978288	35991729
CCL15_chr17_35992582_36006553	0/1	a0001	113	318	59	73	134	18	33	copy fasta	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	a0002	113	119	37	8	65	0	9	copy fasta	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	a0003	113	2	2	0	0	0	0	copy fasta	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	a0004	113	1	0	1	0	0	0	copy fasta	CCL15	chr17	35992582	36006553
CCL15_chr17_35992582_36006553	0/0	a0005	113	1	0	0	1	0	0	copy fasta	CCL15	chr17	35992582	36006553
CCL16_chr17_35971499_35986497	0/1	a0001	120	426	83	69	219	16	38	copy fasta	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	a0002	120	28	13	1	3	0	11	copy fasta	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	a0003	120	2	2	0	0	0	0	copy fasta	CCL16	chr17	35971499	35986497
CCL16_chr17_35971499_35986497	0/0	a0004	120	1	0	0	0	0	1	copy fasta	CCL16	chr17	35971499	35986497
CCL17_chr16_57399767_57421063	1/1	a0001	94	379	89	61	172	11	44	copy fasta	CCL17	chr16	57399767	57421063