JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCL17_chr16_57399767_57421063	0/0	a0002	94	7	7	0	0	0	0	copy fasta	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	a0003	94	1	0	1	0	0	0	copy fasta	CCL17	chr16	57399767	57421063
CCL17_chr16_57399767_57421063	0/0	a0004	94	1	0	0	0	1	0	copy fasta	CCL17	chr16	57399767	57421063
CCL18_chr17_36059272_36077032	0/1	a0001	89	452	95	82	210	18	46	copy fasta	CCL18	chr17	36059272	36077032
CCL18_chr17_36059272_36077032	0/0	a0002	89	3	3	0	0	0	0	copy fasta	CCL18	chr17	36059272	36077032
CCL19_chr9_34684570_34696276	1/1	a0001	98	400	98	86	148	18	48	copy fasta	CCL19	chr9	34684570	34696276
CCL1_chr17_34355328_34368233	1/1	a0001	96	410	82	84	186	14	42	copy fasta	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	a0002	96	4	0	0	4	0	0	copy fasta	CCL1	chr17	34355328	34368233
CCL1_chr17_34355328_34368233	0/0	a0003	96	2	2	0	0	0	0	copy fasta	CCL1	chr17	34355328	34368233
CCL20_chr2_227808842_227822556	1/1	a0001	96	446	97	82	201	16	48	copy fasta	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	a0002	96	1	1	0	0	0	0	copy fasta	CCL20	chr2	227808842	227822556
CCL20_chr2_227808842_227822556	0/0	a0003	96	1	0	0	1	0	0	copy fasta	CCL20	chr2	227808842	227822556
CCL21_chr9_34704005_34715136	1/1	a0001	134	436	92	84	192	18	48	copy fasta	CCL21	chr9	34704005	34715136
CCL22_chr16_57353783_57371189	0/1	a0001	93	382	93	63	169	12	44	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	1/0	a0002	93	53	5	15	30	0	2	copy fasta	CCL22	chr16	57353783	57371189
CCL22_chr16_57353783_57371189	0/0	a0003	93	1	0	0	1	0	0	copy fasta	CCL22	chr16	57353783	57371189
CCL23_chr17_36008058_36022972	0/0	a0001	137	216	85	21	87	3	20	copy fasta	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/1	a0002	137	206	9	55	109	10	22	copy fasta	CCL23	chr17	36008058	36022972
CCL23_chr17_36008058_36022972	0/0	a0003	137	1	0	0	0	1	0	copy fasta	CCL23	chr17	36008058	36022972
CCL24_chr7_75805825_75818806	1/1	a0001	119	229	69	44	78	11	25	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	a0002	119	164	18	28	106	0	12	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	a0003	119	12	0	4	6	1	1	copy fasta	CCL24	chr7	75805825	75818806
CCL24_chr7_75805825_75818806	0/0	a0004	119	1	1	0	0	0	0	copy fasta	CCL24	chr7	75805825	75818806
CCL25_chr19_8047760_8067650	1/0	a0001	150	297	52	56	141	11	36	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/1	a0002	150	73	22	19	25	1	5	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/0	a0003	150	33	1	5	18	4	5	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/0	a0004	150	11	3	5	0	1	2	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/0	a0005	150	6	6	0	0	0	0	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/0	a0006	150	4	1	1	0	0	2	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/0	a0007	150	3	3	0	0	0	0	copy fasta	CCL25	chr19	8047760	8067650
CCL25_chr19_8047760_8067650	0/0	a0008	150	1	0	0	0	1	0	copy fasta	CCL25	chr19	8047760	8067650
CCL26_chr7_75764538_75777211	1/1	a0001	94	421	92	66	195	18	48	copy fasta	CCL26	chr7	75764538	75777211
CCL26_chr7_75764538_75777211	0/0	a0002	94	2	2	0	0	0	0	copy fasta	CCL26	chr7	75764538	75777211
CCL26_chr7_75764538_75777211	0/0	a0003	94	1	0	0	1	0	0	copy fasta	CCL26	chr7	75764538	75777211
CCL27_chr9_34656890_34667657	1/1	a0001	112	356	81	71	152	10	40	copy fasta	CCL27	chr9	34656890	34667657
CCL27_chr9_34656890_34667657	0/0	a0002	112	15	0	4	1	4	6	copy fasta	CCL27	chr9	34656890	34667657
CCL27_chr9_34656890_34667657	0/0	a0003	112	10	9	1	0	0	0	copy fasta	CCL27	chr9	34656890	34667657
CCL27_chr9_34656890_34667657	0/0	a0004	112	1	0	0	1	0	0	copy fasta	CCL27	chr9	34656890	34667657
CCL28_chr5_43374193_43417391	1/1	a0001	127	321	83	60	124	12	40	copy fasta	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	a0002	127	3	3	0	0	0	0	copy fasta	CCL28	chr5	43374193	43417391
CCL28_chr5_43374193_43417391	0/0	a0003	127	2	2	0	0	0	0	copy fasta	CCL28	chr5	43374193	43417391
CCL2_chr17_34250285_34262203	1/1	a0001	99	434	92	82	196	16	46	copy fasta	CCL2	chr17	34250285	34262203
CCL3L3_chr17_36189869_36201758	0/0	a0001	93	122	18	27	52	6	19	copy fasta	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	a0002	93	35	0	8	24	0	3	copy fasta	CCL3L3	chr17	36189869	36201758
CCL3L3_chr17_36189869_36201758	0/0	a0003	93	1	0	1	0	0	0	copy fasta	CCL3L3	chr17	36189869	36201758
CCL3_chr17_36083256_36095143	0/1	a0001	92	372	79	52	186	16	38	copy fasta	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	a0002	92	8	8	0	0	0	0	copy fasta	CCL3	chr17	36083256	36095143
CCL3_chr17_36083256_36095143	0/0	a0003	92	1	1	0	0	0	0	copy fasta	CCL3	chr17	36083256	36095143
CCL4L2_chr17_36206063_36217873	0/0	a0001	103	89	12	22	35	5	15	copy fasta	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	a0002	103	26	5	10	7	1	3	copy fasta	CCL4L2	chr17	36206063	36217873