Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ACSM5_chr16_20404534_20446336	0/1	a0001	579	157	39	13	90	4	10	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	1/0	a0002	579	132	18	51	39	6	17	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0003	579	46	0	3	38	1	4	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0004	579	21	6	0	13	0	2	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0005	579	12	3	5	1	0	3	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0006	579	8	5	0	3	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0007	579	7	7	0	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0008	579	7	7	0	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0009	579	6	6	0	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0010	579	4	0	0	4	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0011	579	4	0	0	4	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0012	579	3	3	0	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0013	579	2	0	0	0	0	2	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0014	581	2	0	0	2	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0015	579	2	0	0	0	2	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0016	579	2	2	0	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0017	579	2	0	2	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0018	579	2	0	0	0	2	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0019	579	1	0	0	0	0	1	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0020	579	1	0	0	1	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0021	581	1	0	0	1	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0022	579	1	0	0	1	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0023	579	1	1	0	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0024	579	1	0	1	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0025	579	1	0	0	0	0	1	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0026	572	1	0	0	0	0	1	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0027	579	1	0	1	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0028	579	1	0	0	0	0	1	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0029	579	1	0	0	0	1	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0030	579	1	0	0	0	1	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0031	579	1	0	0	1	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM5_chr16_20404534_20446336	0/0	a0032	579	1	1	0	0	0	0	copy fasta	ACSM5	chr16	20404534	20446336
ACSM6_chr10_95189238_95233929	1/0	a0001	480	203	37	28	106	7	24	copy fasta	ACSM6	chr10	95189238	95233929
ACSM6_chr10_95189238_95233929	0/1	a0002	480	49	2	16	8	6	16	copy fasta	ACSM6	chr10	95189238	95233929
ACSM6_chr10_95189238_95233929	0/0	a0003	480	39	22	12	0	3	2	copy fasta	ACSM6	chr10	95189238	95233929
ACSM6_chr10_95189238_95233929	0/0	a0004	480	17	17	0	0	0	0	copy fasta	ACSM6	chr10	95189238	95233929
ACSM6_chr10_95189238_95233929	0/0	a0005	480	2	2	0	0	0	0	copy fasta	ACSM6	chr10	95189238	95233929
ACSM6_chr10_95189238_95233929	0/0	a0006	253	1	1	0	0	0	0	copy fasta	ACSM6	chr10	95189238	95233929
ACSM6_chr10_95189238_95233929	0/0	a0007	480	1	1	0	0	0	0	copy fasta	ACSM6	chr10	95189238	95233929
ACSM6_chr10_95189238_95233929	0/0	a0008	480	1	1	0	0	0	0	copy fasta	ACSM6	chr10	95189238	95233929
ACSM6_chr10_95189238_95233929	0/0	a0009	480	1	1	0	0	0	0	copy fasta	ACSM6	chr10	95189238	95233929
ACSS1_chr20_25001237_25063139	1/0	a0001	689	166	39	45	46	11	24	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/1	a0002	689	38	13	6	13	1	4	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	a0003	689	12	11	1	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	a0004	689	9	9	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	a0005	689	4	4	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	a0006	689	3	3	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	a0007	689	3	2	1	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	a0008	689	3	3	0	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139
ACSS1_chr20_25001237_25063139	0/0	a0009	689	2	1	1	0	0	0	copy fasta	ACSS1	chr20	25001237	25063139