JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCL4L2_chr17_36206063_36217873	0/0	a0003	103	16	0	2	12	0	2	copy fasta	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	a0004	103	11	0	0	7	0	4	copy fasta	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	a0005	103	10	0	0	10	0	0	copy fasta	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	a0006	103	3	0	0	3	0	0	copy fasta	CCL4L2	chr17	36206063	36217873
CCL4L2_chr17_36206063_36217873	0/0	a0007	103	1	1	0	0	0	0	copy fasta	CCL4L2	chr17	36206063	36217873
CCL4_chr17_36098827_36110614	0/1	a0001	92	330	87	66	137	11	28	copy fasta	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	a0002	92	74	2	13	42	7	10	copy fasta	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	a0003	92	4	0	0	4	0	0	copy fasta	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	a0004	92	2	1	1	0	0	0	copy fasta	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	a0005	92	1	0	0	1	0	0	copy fasta	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	a0006	92	1	0	0	1	0	0	copy fasta	CCL4	chr17	36098827	36110614
CCL4_chr17_36098827_36110614	0/0	a0007	92	1	0	0	1	0	0	copy fasta	CCL4	chr17	36098827	36110614
CCL5_chr17_35866491_35885360	0/1	a0001	91	373	84	66	170	14	38	copy fasta	CCL5	chr17	35866491	35885360
CCL5_chr17_35866491_35885360	0/0	a0002	91	2	0	0	2	0	0	copy fasta	CCL5	chr17	35866491	35885360
CCL7_chr17_34265221_34277242	1/1	a0001	99	425	92	80	193	16	42	copy fasta	CCL7	chr17	34265221	34277242
CCL7_chr17_34265221_34277242	0/0	a0002	99	1	0	0	1	0	0	copy fasta	CCL7	chr17	34265221	34277242
CCL7_chr17_34265221_34277242	0/0	a0003	99	1	0	0	1	0	0	copy fasta	CCL7	chr17	34265221	34277242
CCL7_chr17_34265221_34277242	0/0	a0004	13	1	0	0	1	0	0	copy fasta	CCL7	chr17	34265221	34277242
CCL8_chr17_34314435_34326402	1/0	a0001	99	307	81	55	134	11	25	copy fasta	CCL8	chr17	34314435	34326402
CCL8_chr17_34314435_34326402	0/0	a0002	99	113	6	19	68	5	15	copy fasta	CCL8	chr17	34314435	34326402
CCL8_chr17_34314435_34326402	0/0	a0003	99	3	3	0	0	0	0	copy fasta	CCL8	chr17	34314435	34326402
CCL8_chr17_34314435_34326402	0/1	a0004	99	1	0	0	0	0	0	copy fasta	CCL8	chr17	34314435	34326402
CCM2L_chr20_32005438_32037180	1/1	a0001	571	273	81	68	84	15	23	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	a0002	572	14	7	2	0	0	5	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	a0003	571	4	0	2	0	1	1	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	a0004	571	3	0	3	0	0	0	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	a0005	571	1	0	0	1	0	0	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	a0006	571	1	0	1	0	0	0	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	a0007	571	1	1	0	0	0	0	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	a0008	571	1	1	0	0	0	0	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	a0009	571	1	0	0	1	0	0	copy fasta	CCM2L	chr20	32005438	32037180
CCM2L_chr20_32005438_32037180	0/0	a0010	571	1	0	0	0	0	1	copy fasta	CCM2L	chr20	32005438	32037180
CCM2_chr7_44995201_45081453	1/1	a0001	444	254	78	47	87	11	29	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	a0002	444	41	1	13	18	2	7	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	a0003	444	13	1	10	2	0	0	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	a0004	444	5	0	2	0	3	0	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	a0005	444	1	0	0	1	0	0	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	a0006	444	1	0	0	1	0	0	copy fasta	CCM2	chr7	44995201	45081453
CCM2_chr7_44995201_45081453	0/0	a0007	444	1	0	0	1	0	0	copy fasta	CCM2	chr7	44995201	45081453
CCN1_chr1_85575761_85588950	1/1	a0001	381	461	98	86	219	18	38	copy fasta	CCN1	chr1	85575761	85588950
CCN1_chr1_85575761_85588950	0/0	a0002	381	2	0	0	0	0	2	copy fasta	CCN1	chr1	85575761	85588950
CCN1_chr1_85575761_85588950	0/0	a0003	381	2	0	0	2	0	0	copy fasta	CCN1	chr1	85575761	85588950
CCN1_chr1_85575761_85588950	0/0	a0004	381	1	0	0	1	0	0	copy fasta	CCN1	chr1	85575761	85588950
CCN2_chr6_131943176_131956372	0/1	a0001	349	445	95	78	209	16	46	copy fasta	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	a0002	349	1	1	0	0	0	0	copy fasta	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	0/0	a0003	349	1	0	0	1	0	0	copy fasta	CCN2	chr6	131943176	131956372
CCN2_chr6_131943176_131956372	1/0	a0004	349	1	0	0	0	0	0	copy fasta	CCN2	chr6	131943176	131956372
CCN3_chr8_119411446_119429434	1/1	a0001	357	221	35	50	112	4	18	copy fasta	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	a0002	357	123	50	17	40	4	12	copy fasta	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	a0003	357	6	3	1	0	0	2	copy fasta	CCN3	chr8	119411446	119429434