JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCN3_chr8_119411446_119429434	0/0	a0004	357	1	1	0	0	0	0	copy fasta	CCN3	chr8	119411446	119429434
CCN3_chr8_119411446_119429434	0/0	a0005	357	1	1	0	0	0	0	copy fasta	CCN3	chr8	119411446	119429434
CCN4_chr8_133186039_133236690	1/1	a0001	367	373	86	64	165	16	40	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	a0002	367	8	5	1	0	2	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	a0003	367	7	0	6	0	0	1	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	a0004	367	3	3	0	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	a0005	367	2	0	0	2	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	a0006	367	1	0	0	1	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	a0007	367	1	0	1	0	0	0	copy fasta	CCN4	chr8	133186039	133236690
CCN4_chr8_133186039_133236690	0/0	a0008	367	1	0	0	0	0	1	copy fasta	CCN4	chr8	133186039	133236690
CCN5_chr20_44710369_44732811	1/1	a0001	250	428	79	82	202	16	47	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	a0002	250	9	9	0	0	0	0	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	a0003	250	3	3	0	0	0	0	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	a0004	250	2	2	0	0	0	0	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	a0005	250	1	0	0	1	0	0	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	a0006	250	1	1	0	0	0	0	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	a0007	238	1	0	0	0	0	1	copy fasta	CCN5	chr20	44710369	44732811
CCN5_chr20_44710369_44732811	0/0	a0008	250	1	0	0	1	0	0	copy fasta	CCN5	chr20	44710369	44732811
CCN6_chr6_112049104_112074686	1/1	a0001	354	313	46	60	157	11	37	copy fasta	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	a0002	354	104	26	16	50	3	9	copy fasta	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	a0003	354	6	6	0	0	0	0	copy fasta	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	a0004	354	4	4	0	0	0	0	copy fasta	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	a0005	354	2	2	0	0	0	0	copy fasta	CCN6	chr6	112049104	112074686
CCN6_chr6_112049104_112074686	0/0	a0006	354	1	0	0	1	0	0	copy fasta	CCN6	chr6	112049104	112074686
CCNA1_chr13_36427495_36447870	1/1	a0001	421	439	96	76	203	18	44	copy fasta	CCNA1	chr13	36427495	36447870
CCNA1_chr13_36427495_36447870	0/0	a0002	421	1	0	0	1	0	0	copy fasta	CCNA1	chr13	36427495	36447870
CCNA2_chr4_121811444_121828883	0/1	a0001	432	393	87	77	170	17	41	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	1/0	a0002	432	15	0	0	11	1	2	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	a0003	432	2	0	0	2	0	0	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	a0004	432	1	1	0	0	0	0	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	a0005	432	1	0	0	0	0	1	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	a0006	432	1	0	1	0	0	0	copy fasta	CCNA2	chr4	121811444	121828883
CCNA2_chr4_121811444_121828883	0/0	a0007	432	1	0	0	1	0	0	copy fasta	CCNA2	chr4	121811444	121828883
CCNB1IP1_chr14_20306370_20338279	1/1	a0001	277	413	90	72	191	14	44	copy fasta	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	a0002	277	2	2	0	0	0	0	copy fasta	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	a0003	277	1	0	0	1	0	0	copy fasta	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	a0004	277	1	1	0	0	0	0	copy fasta	CCNB1IP1	chr14	20306370	20338279
CCNB1IP1_chr14_20306370_20338279	0/0	a0005	277	1	1	0	0	0	0	copy fasta	CCNB1IP1	chr14	20306370	20338279
CCNB1_chr5_69162150_69183245	1/1	a0001	433	418	89	80	192	10	45	copy fasta	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	a0002	433	1	1	0	0	0	0	copy fasta	CCNB1	chr5	69162150	69183245
CCNB1_chr5_69162150_69183245	0/0	a0003	433	1	0	0	0	0	1	copy fasta	CCNB1	chr5	69162150	69183245
CCNB2_chr15_59100146_59130045	1/1	a0001	398	380	87	68	163	18	42	copy fasta	CCNB2	chr15	59100146	59130045
CCNB2_chr15_59100146_59130045	0/0	a0002	398	4	4	0	0	0	0	copy fasta	CCNB2	chr15	59100146	59130045
CCNB2_chr15_59100146_59130045	0/0	a0003	398	3	0	0	3	0	0	copy fasta	CCNB2	chr15	59100146	59130045
CCNB2_chr15_59100146_59130045	0/0	a0004	398	1	1	0	0	0	0	copy fasta	CCNB2	chr15	59100146	59130045
CCNC_chr6_99537387_99573660	1/1	a0001	283	410	84	78	184	14	48	copy fasta	CCNC	chr6	99537387	99573660
CCND1_chr11_69636156_69659474	1/1	a0001	295	411	94	82	171	18	44	copy fasta	CCND1	chr11	69636156	69659474
CCND1_chr11_69636156_69659474	0/0	a0002	295	1	0	0	1	0	0	copy fasta	CCND1	chr11	69636156	69659474
CCND2_chr12_4268762_4310353	1/1	a0001	289	460	100	84	214	12	48	copy fasta	CCND2	chr12	4268762	4310353
CCND3_chr6_41929952_41946808	0/0	a0001	292	252	78	46	102	9	17	copy fasta	CCND3	chr6	41929952	41946808