JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCND3_chr6_41929952_41946808	1/1	a0002	292	197	16	32	110	6	31	copy fasta	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	a0003	292	5	4	1	0	0	0	copy fasta	CCND3	chr6	41929952	41946808
CCND3_chr6_41929952_41946808	0/0	a0004	292	2	0	1	0	1	0	copy fasta	CCND3	chr6	41929952	41946808
CCNDBP1_chr15_43180403_43202177	1/1	a0001	360	353	78	58	172	7	36	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	a0002	360	4	0	0	4	0	0	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNDBP1_chr15_43180403_43202177	0/0	a0003	360	1	0	0	0	1	0	copy fasta	CCNDBP1	chr15	43180403	43202177
CCNE1_chr19_29806991_29829312	1/1	a0001	410	418	97	72	188	13	46	copy fasta	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	a0002	410	4	1	0	0	3	0	copy fasta	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	a0003	410	1	0	1	0	0	0	copy fasta	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	a0004	410	1	0	0	1	0	0	copy fasta	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	a0005	410	1	0	1	0	0	0	copy fasta	CCNE1	chr19	29806991	29829312
CCNE1_chr19_29806991_29829312	0/0	a0006	410	1	0	0	1	0	0	copy fasta	CCNE1	chr19	29806991	29829312
CCNE2_chr8_94875224_94900201	1/1	a0001	404	345	86	58	151	10	38	copy fasta	CCNE2	chr8	94875224	94900201
CCNE2_chr8_94875224_94900201	0/0	a0002	404	4	0	4	0	0	0	copy fasta	CCNE2	chr8	94875224	94900201
CCNE2_chr8_94875224_94900201	0/0	a0003	404	1	1	0	0	0	0	copy fasta	CCNE2	chr8	94875224	94900201
CCNE2_chr8_94875224_94900201	0/0	a0004	404	1	1	0	0	0	0	copy fasta	CCNE2	chr8	94875224	94900201
CCNE2_chr8_94875224_94900201	0/0	a0005	404	1	0	0	1	0	0	copy fasta	CCNE2	chr8	94875224	94900201
CCNF_chr16_2424447_2463854	1/1	a0001	786	270	86	56	76	12	38	copy fasta	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	a0002	786	3	0	0	3	0	0	copy fasta	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	a0003	786	2	0	0	0	0	2	copy fasta	CCNF	chr16	2424447	2463854
CCNF_chr16_2424447_2463854	0/0	a0004	786	1	0	0	1	0	0	copy fasta	CCNF	chr16	2424447	2463854
CCNG1_chr5_163432595_163450016	1/1	a0001	295	410	96	72	195	7	38	copy fasta	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	a0002	295	6	0	2	0	1	3	copy fasta	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	a0003	295	3	0	2	0	0	1	copy fasta	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	a0004	295	1	0	0	1	0	0	copy fasta	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	a0005	295	1	0	0	1	0	0	copy fasta	CCNG1	chr5	163432595	163450016
CCNG1_chr5_163432595_163450016	0/0	a0006	295	1	0	0	1	0	0	copy fasta	CCNG1	chr5	163432595	163450016
CCNG2_chr4_77152207_77175060	1/1	a0001	344	421	92	75	190	18	44	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	a0002	344	3	3	0	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	a0003	344	3	0	1	0	0	2	copy fasta	CCNG2	chr4	77152207	77175060
CCNG2_chr4_77152207_77175060	0/0	a0004	344	1	1	0	0	0	0	copy fasta	CCNG2	chr4	77152207	77175060
CCNH_chr5_87389274_87417930	1/0	a0001	323	293	64	49	142	8	29	copy fasta	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/1	a0002	323	37	3	10	13	4	6	copy fasta	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	a0003	323	9	8	1	0	0	0	copy fasta	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	a0004	323	7	7	0	0	0	0	copy fasta	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	a0005	323	6	0	0	6	0	0	copy fasta	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	a0006	323	1	0	0	1	0	0	copy fasta	CCNH	chr5	87389274	87417930
CCNH_chr5_87389274_87417930	0/0	a0007	323	1	0	0	0	0	1	copy fasta	CCNH	chr5	87389274	87417930
CCNI2_chr5_132742426_132759403	0/0	a0001	369	218	71	22	117	2	6	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	1/1	a0002	369	124	8	33	49	8	24	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	a0003	369	13	11	2	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	a0004	369	2	2	0	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	a0005	369	1	0	1	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	a0006	369	1	0	0	1	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	a0007	369	1	1	0	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	a0008	369	1	0	0	1	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI2_chr5_132742426_132759403	0/0	a0009	369	1	1	0	0	0	0	copy fasta	CCNI2	chr5	132742426	132759403
CCNI_chr4_77042155_77080989	1/1	a0001	377	384	89	67	168	14	44	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	a0002	377	3	3	0	0	0	0	copy fasta	CCNI	chr4	77042155	77080989
CCNI_chr4_77042155_77080989	0/0	a0003	377	1	0	1	0	0	0	copy fasta	CCNI	chr4	77042155	77080989