JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCNJL_chr5_160244083_160317564	1/1	a0001	387	283	69	66	109	12	25	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	a0002	387	49	10	3	29	0	7	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	a0003	387	2	1	1	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	a0004	387	1	0	0	1	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	a0005	387	1	1	0	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	a0006	387	1	0	0	1	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJL_chr5_160244083_160317564	0/0	a0007	387	1	1	0	0	0	0	copy fasta	CCNJL	chr5	160244083	160317564
CCNJ_chr10_96038583_96065870	1/1	a0001	383	418	94	76	186	16	44	copy fasta	CCNJ	chr10	96038583	96065870
CCNK_chr14_99476409_99517440	1/1	a0001	580	324	84	55	131	16	36	copy fasta	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	a0002	580	1	0	0	1	0	0	copy fasta	CCNK	chr14	99476409	99517440
CCNK_chr14_99476409_99517440	0/0	a0003	580	1	0	1	0	0	0	copy fasta	CCNK	chr14	99476409	99517440
CCNL1_chr3_157142553_157165147	1/1	a0001	526	424	96	72	192	18	44	copy fasta	CCNL1	chr3	157142553	157165147
CCNL1_chr3_157142553_157165147	0/0	a0002	522	1	1	0	0	0	0	copy fasta	CCNL1	chr3	157142553	157165147
CCNL1_chr3_157142553_157165147	0/0	a0003	526	1	1	0	0	0	0	copy fasta	CCNL1	chr3	157142553	157165147
CCNL2_chr1_1380711_1404335	1/1	a0001	520	343	90	63	130	15	43	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	a0002	520	10	0	0	10	0	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	a0003	520	6	0	3	0	1	2	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	a0004	520	3	0	0	3	0	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	a0005	520	3	0	2	0	0	1	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	a0006	520	2	0	0	2	0	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	a0007	520	1	0	0	1	0	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	a0008	520	1	0	0	1	0	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNL2_chr1_1380711_1404335	0/0	a0009	520	1	0	0	1	0	0	copy fasta	CCNL2	chr1	1380711	1404335
CCNO_chr5_55226152_55238608	1/1	a0001	350	379	81	71	170	11	44	copy fasta	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	a0002	350	3	3	0	0	0	0	copy fasta	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	a0003	350	1	0	0	0	1	0	copy fasta	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	a0004	350	1	1	0	0	0	0	copy fasta	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	a0005	350	1	1	0	0	0	0	copy fasta	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	a0006	350	1	1	0	0	0	0	copy fasta	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	a0007	350	1	0	1	0	0	0	copy fasta	CCNO	chr5	55226152	55238608
CCNO_chr5_55226152_55238608	0/0	a0008	350	1	1	0	0	0	0	copy fasta	CCNO	chr5	55226152	55238608
CCNP_chr19_40217208_40231689	1/1	a0001	307	407	97	74	184	18	32	copy fasta	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	a0002	307	2	0	0	2	0	0	copy fasta	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	a0003	307	1	1	0	0	0	0	copy fasta	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	a0004	307	1	1	0	0	0	0	copy fasta	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	a0005	307	1	0	0	0	0	1	copy fasta	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	a0006	307	1	1	0	0	0	0	copy fasta	CCNP	chr19	40217208	40231689
CCNP_chr19_40217208_40231689	0/0	a0007	307	1	0	0	0	0	1	copy fasta	CCNP	chr19	40217208	40231689
CCNQ_chrX_153582925_153604139	1/1	a0001	248	296	75	46	134	7	32	copy fasta	CCNQ	chrX	153582925	153604139
CCNQ_chrX_153582925_153604139	0/0	a0002	248	1	0	0	1	0	0	copy fasta	CCNQ	chrX	153582925	153604139
CCNQ_chrX_153582925_153604139	0/0	a0003	248	1	0	0	1	0	0	copy fasta	CCNQ	chrX	153582925	153604139
CCNQ_chrX_153582925_153604139	0/0	a0004	128	1	0	0	1	0	0	copy fasta	CCNQ	chrX	153582925	153604139
CCNQ_chrX_153582925_153604139	0/0	a0005	129	1	0	0	1	0	0	copy fasta	CCNQ	chrX	153582925	153604139
CCNQ_chrX_153582925_153604139	0/0	a0006	129	1	0	0	1	0	0	copy fasta	CCNQ	chrX	153582925	153604139
CCNQ_chrX_153582925_153604139	0/0	a0007	248	1	1	0	0	0	0	copy fasta	CCNQ	chrX	153582925	153604139
CCNT1_chr12_48683458_48721707	1/1	a0001	726	377	92	67	166	14	36	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	a0002	726	3	2	1	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	a0003	726	2	0	0	2	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	a0004	726	2	0	2	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT1_chr12_48683458_48721707	0/0	a0005	726	1	1	0	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707