JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCNT1_chr12_48683458_48721707	0/0	a0006	726	1	1	0	0	0	0	copy fasta	CCNT1	chr12	48683458	48721707
CCNT2_chr2_134913822_134964342	1/1	a0001	730	398	83	71	191	10	41	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	a0002	730	2	0	0	2	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	a0003	730	1	1	0	0	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	a0004	730	1	0	0	1	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	a0005	730	1	0	1	0	0	0	copy fasta	CCNT2	chr2	134913822	134964342
CCNT2_chr2_134913822_134964342	0/0	a0006	730	1	0	0	0	0	1	copy fasta	CCNT2	chr2	134913822	134964342
CCNYL1_chr2_207706640_207761174	1/1	a0001	359	352	88	64	146	14	38	copy fasta	CCNYL1	chr2	207706640	207761174
CCNYL1_chr2_207706640_207761174	0/0	a0002	359	2	0	0	2	0	0	copy fasta	CCNYL1	chr2	207706640	207761174
CCNY_chr10_35331509_35577667	1/1	a0001	341	280	83	52	105	6	32	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	a0002	341	13	0	0	13	0	0	copy fasta	CCNY	chr10	35331509	35577667
CCNY_chr10_35331509_35577667	0/0	a0003	341	3	3	0	0	0	0	copy fasta	CCNY	chr10	35331509	35577667
CCP110_chr16_19518942_19558408	0/1	a0001	991	116	44	27	25	4	15	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	a0002	991	103	26	10	63	1	3	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	a0003	991	75	16	14	36	1	8	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	1/0	a0004	991	55	6	11	26	1	10	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	a0005	991	22	0	0	22	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	a0006	991	6	0	0	6	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	a0007	991	4	0	3	0	1	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	a0008	991	1	0	0	1	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	a0009	991	1	0	0	0	0	1	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	a0010	991	1	0	0	0	0	1	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	a0011	991	1	0	0	1	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCP110_chr16_19518942_19558408	0/0	a0012	991	1	0	1	0	0	0	copy fasta	CCP110	chr16	19518942	19558408
CCPG1_chr15_55350239_55413359	1/1	a0001	807	311	71	57	132	13	36	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	a0002	807	20	6	3	8	2	1	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	a0003	807	9	0	4	0	1	4	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	a0004	807	7	7	0	0	0	0	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	a0005	807	5	5	0	0	0	0	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	a0006	807	1	1	0	0	0	0	copy fasta	CCPG1	chr15	55350239	55413359
CCPG1_chr15_55350239_55413359	0/0	a0007	807	1	0	0	0	0	1	copy fasta	CCPG1	chr15	55350239	55413359
CCR10_chr17_42673889_42686843	1/1	a0001	362	346	73	73	149	10	39	copy fasta	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	a0002	362	12	11	1	0	0	0	copy fasta	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	a0003	362	3	0	0	3	0	0	copy fasta	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	a0004	362	2	0	2	0	0	0	copy fasta	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	a0005	362	1	1	0	0	0	0	copy fasta	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	a0006	362	1	0	0	0	0	1	copy fasta	CCR10	chr17	42673889	42686843
CCR10_chr17_42673889_42686843	0/0	a0007	362	1	1	0	0	0	0	copy fasta	CCR10	chr17	42673889	42686843
CCR1_chr3_46196711_46213313	1/1	a0001	355	354	82	69	153	12	36	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	a0002	355	4	4	0	0	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	a0003	355	1	0	0	1	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR1_chr3_46196711_46213313	0/0	a0004	355	1	0	1	0	0	0	copy fasta	CCR1	chr3	46196711	46213313
CCR2_chr3_46349111_46365940	1/1	a0001	360	337	80	50	157	13	35	copy fasta	CCR2	chr3	46349111	46365940
CCR2_chr3_46349111_46365940	0/0	a0002	360	101	10	24	57	1	9	copy fasta	CCR2	chr3	46349111	46365940
CCR3_chr3_46237460_46271706	1/1	a0001	355	404	85	72	194	13	38	copy fasta	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	a0002	355	2	1	0	0	1	0	copy fasta	CCR3	chr3	46237460	46271706
CCR3_chr3_46237460_46271706	0/0	a0003	355	2	0	2	0	0	0	copy fasta	CCR3	chr3	46237460	46271706
CCR4_chr3_32946644_32961349	1/1	a0001	360	388	86	78	172	12	38	copy fasta	CCR4	chr3	32946644	32961349
CCR5_chr3_46365946_46381206	1/1	a0001	352	390	84	69	181	12	42	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	a0002	352	18	0	0	18	0	0	copy fasta	CCR5	chr3	46365946	46381206