JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCR5_chr3_46365946_46381206	0/0	a0003	352	5	4	1	0	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	a0004	215	4	0	2	0	2	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	a0005	67	1	0	0	1	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	a0006	352	1	0	0	1	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	a0007	352	1	0	1	0	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	a0008	352	1	0	1	0	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR5_chr3_46365946_46381206	0/0	a0009	352	1	0	0	1	0	0	copy fasta	CCR5	chr3	46365946	46381206
CCR6_chr6_167118096_167144141	1/1	a0001	374	453	89	74	226	18	44	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	a0002	374	2	2	0	0	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	a0003	374	1	0	0	1	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	a0004	374	1	0	0	0	0	1	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	a0005	374	1	0	0	0	0	1	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	a0006	374	1	1	0	0	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR6_chr6_167118096_167144141	0/0	a0007	374	1	0	0	1	0	0	copy fasta	CCR6	chr6	167118096	167144141
CCR7_chr17_40548769_40570472	1/1	a0001	378	405	95	72	179	18	39	copy fasta	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	a0002	378	1	1	0	0	0	0	copy fasta	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	a0003	378	1	0	0	1	0	0	copy fasta	CCR7	chr17	40548769	40570472
CCR7_chr17_40548769_40570472	0/0	a0004	378	1	0	0	0	0	1	copy fasta	CCR7	chr17	40548769	40570472
CCR8_chr3_39324709_39338680	1/1	a0001	355	354	89	56	165	8	34	copy fasta	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	a0002	355	39	4	17	0	8	10	copy fasta	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	a0003	355	1	0	1	0	0	0	copy fasta	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	a0004	355	1	0	0	1	0	0	copy fasta	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	a0005	355	1	0	0	1	0	0	copy fasta	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	a0006	355	1	0	0	1	0	0	copy fasta	CCR8	chr3	39324709	39338680
CCR8_chr3_39324709_39338680	0/0	a0007	355	1	1	0	0	0	0	copy fasta	CCR8	chr3	39324709	39338680
CCR9_chr3_45881543_45908174	1/1	a0001	369	404	86	71	197	14	34	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	a0002	369	11	3	1	7	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	a0003	369	3	0	0	3	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	a0004	369	2	2	0	0	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	a0005	369	1	0	0	1	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	a0006	369	1	1	0	0	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	a0007	369	1	0	0	1	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCR9_chr3_45881543_45908174	0/0	a0008	369	1	0	0	1	0	0	copy fasta	CCR9	chr3	45881543	45908174
CCRL2_chr3_46402259_46414523	0/0	a0000	0	1	1	0	0	0	0	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	1/1	a0001	344	229	61	40	106	5	15	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	0/0	a0002	344	134	9	22	80	5	18	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	0/0	a0003	344	26	13	9	0	4	0	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	0/0	a0004	344	19	0	5	4	0	10	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	0/0	a0005	344	2	2	0	0	0	0	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	0/0	a0006	344	2	0	0	2	0	0	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	0/0	a0007	344	1	1	0	0	0	0	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	0/0	a0008	344	1	1	0	0	0	0	copy fasta	CCRL2	chr3	46402259	46414523
CCRL2_chr3_46402259_46414523	0/0	a0009	344	1	0	0	0	0	1	copy fasta	CCRL2	chr3	46402259	46414523
CCSAP_chr1_229316015_229348047	1/1	a0001	270	432	92	83	195	14	46	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	a0002	265	1	1	0	0	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	a0003	270	1	0	1	0	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	a0004	270	1	1	0	0	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSAP_chr1_229316015_229348047	0/0	a0005	270	1	0	0	1	0	0	copy fasta	CCSAP	chr1	229316015	229348047
CCSER1_chr4_90122394_91610295	0/0	a0001	900	26	18	5	0	0	3	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	a0002	900	6	5	0	0	0	1	copy fasta	CCSER1	chr4	90122394	91610295