JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCSER1_chr4_90122394_91610295	0/0	a0003	900	2	2	0	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	a0004	900	2	2	0	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	a0005	900	1	0	1	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER1_chr4_90122394_91610295	0/0	a0006	900	1	1	0	0	0	0	copy fasta	CCSER1	chr4	90122394	91610295
CCSER2_chr10_84323589_84523517	1/1	a0001	1047	236	54	51	97	7	25	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	a0002	1047	101	8	21	60	2	10	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	a0003	1047	15	14	1	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	a0004	1047	5	0	0	5	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	a0005	1047	3	0	0	0	1	2	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	a0006	1047	1	0	0	1	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	a0007	1047	1	0	0	1	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	a0008	1047	1	0	1	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	a0009	1047	1	1	0	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	a0010	1047	1	1	0	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	a0011	1047	1	1	0	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	a0012	1047	1	1	0	0	0	0	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	a0013	1047	1	0	0	0	0	1	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	a0014	1047	1	0	0	0	0	1	copy fasta	CCSER2	chr10	84323589	84523517
CCSER2_chr10_84323589_84523517	0/0	a0015	1047	1	0	0	0	0	1	copy fasta	CCSER2	chr10	84323589	84523517
CCS_chr11_66588185_66611019	1/1	a0001	274	395	84	64	184	16	45	copy fasta	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	a0002	274	2	2	0	0	0	0	copy fasta	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	a0003	274	2	0	2	0	0	0	copy fasta	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	a0004	274	1	0	0	1	0	0	copy fasta	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	a0005	274	1	0	0	0	0	1	copy fasta	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	a0006	274	1	1	0	0	0	0	copy fasta	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	a0007	274	1	0	0	1	0	0	copy fasta	CCS	chr11	66588185	66611019
CCS_chr11_66588185_66611019	0/0	a0008	274	1	1	0	0	0	0	copy fasta	CCS	chr11	66588185	66611019
CCT2_chr12_69580459_69606570	1/1	a0001	535	407	98	69	194	14	30	copy fasta	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	a0002	535	1	0	0	1	0	0	copy fasta	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	a0003	535	1	0	0	1	0	0	copy fasta	CCT2	chr12	69580459	69606570
CCT2_chr12_69580459_69606570	0/0	a0004	535	1	0	1	0	0	0	copy fasta	CCT2	chr12	69580459	69606570
CCT3_chr1_156303968_156343292	1/1	a0001	545	339	86	70	136	12	33	copy fasta	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	a0002	545	46	0	3	39	0	4	copy fasta	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	a0003	545	5	0	1	0	2	2	copy fasta	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	a0004	545	1	0	0	0	0	1	copy fasta	CCT3	chr1	156303968	156343292
CCT3_chr1_156303968_156343292	0/0	a0005	545	1	0	0	1	0	0	copy fasta	CCT3	chr1	156303968	156343292
CCT4_chr2_61863085_61893656	1/1	a0001	539	409	88	75	182	18	44	copy fasta	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	a0002	539	2	0	0	2	0	0	copy fasta	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	a0003	539	1	0	1	0	0	0	copy fasta	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	a0004	539	1	0	0	1	0	0	copy fasta	CCT4	chr2	61863085	61893656
CCT4_chr2_61863085_61893656	0/0	a0005	539	1	0	0	1	0	0	copy fasta	CCT4	chr2	61863085	61893656
CCT5_chr5_10245280_10271389	1/1	a0001	541	358	88	65	147	16	40	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	a0002	541	7	0	4	1	0	2	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	a0003	541	2	0	0	2	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	a0004	541	2	0	2	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	a0005	541	2	1	1	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	a0006	541	1	0	0	1	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	a0007	541	1	0	0	1	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT5_chr5_10245280_10271389	0/0	a0008	541	1	1	0	0	0	0	copy fasta	CCT5	chr5	10245280	10271389
CCT6A_chr7_56046765_56068989	1/1	a0001	531	392	83	76	175	16	40	copy fasta	CCT6A	chr7	56046765	56068989