JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CCT6A_chr7_56046765_56068989	0/0	a0002	531	27	8	2	17	0	0	copy fasta	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	a0003	531	5	0	0	5	0	0	copy fasta	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	a0004	531	1	0	0	1	0	0	copy fasta	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	a0005	470	1	0	0	1	0	0	copy fasta	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	a0006	531	1	0	0	1	0	0	copy fasta	CCT6A	chr7	56046765	56068989
CCT6A_chr7_56046765_56068989	0/0	a0007	531	1	1	0	0	0	0	copy fasta	CCT6A	chr7	56046765	56068989
CCT6B_chr17_34922861_34966460	1/1	a0001	530	172	60	38	44	7	21	copy fasta	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	a0002	530	136	15	22	86	4	9	copy fasta	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	a0003	530	81	15	8	43	5	10	copy fasta	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	a0004	530	7	2	0	5	0	0	copy fasta	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	a0005	530	2	0	0	2	0	0	copy fasta	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	a0006	530	1	0	1	0	0	0	copy fasta	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	a0007	530	1	0	0	0	0	1	copy fasta	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	a0008	530	1	0	1	0	0	0	copy fasta	CCT6B	chr17	34922861	34966460
CCT6B_chr17_34922861_34966460	0/0	a0009	530	1	0	0	0	0	1	copy fasta	CCT6B	chr17	34922861	34966460
CCT7_chr2_73229308_73258005	1/1	a0001	543	375	96	68	157	18	34	copy fasta	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	a0002	543	1	0	0	1	0	0	copy fasta	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	a0003	543	1	1	0	0	0	0	copy fasta	CCT7	chr2	73229308	73258005
CCT7_chr2_73229308_73258005	0/0	a0004	543	1	1	0	0	0	0	copy fasta	CCT7	chr2	73229308	73258005
CCT8L2_chr22_16585751_16597810	0/1	a0001	557	335	82	59	144	10	39	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	1/0	a0002	557	84	6	15	55	2	5	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	a0003	364	3	2	1	0	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	a0004	557	3	3	0	0	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	a0005	557	1	0	1	0	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	a0006	557	1	0	1	0	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	a0007	364	1	1	0	0	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	a0008	557	1	0	0	1	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	a0009	557	1	0	0	1	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	a0010	557	1	0	1	0	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8L2_chr22_16585751_16597810	0/0	a0011	557	1	0	0	1	0	0	copy fasta	CCT8L2	chr22	16585751	16597810
CCT8_chr21_29051326_29078648	1/1	a0001	548	408	83	72	198	12	41	copy fasta	CCT8	chr21	29051326	29078648
CCT8_chr21_29051326_29078648	0/0	a0002	548	13	13	0	0	0	0	copy fasta	CCT8	chr21	29051326	29078648
CCT8_chr21_29051326_29078648	0/0	a0003	548	1	0	0	1	0	0	copy fasta	CCT8	chr21	29051326	29078648
CCT8_chr21_29051326_29078648	0/0	a0004	548	1	0	0	1	0	0	copy fasta	CCT8	chr21	29051326	29078648
CCT8_chr21_29051326_29078648	0/0	a0005	548	1	0	0	0	0	1	copy fasta	CCT8	chr21	29051326	29078648
CCZ1B_chr7_6793937_6831275	0/0	a0001	482	255	50	49	125	11	20	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	a0002	482	86	2	19	46	3	16	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	a0003	482	11	10	0	1	0	0	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	a0004	482	1	0	0	1	0	0	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1B_chr7_6793937_6831275	0/0	a0005	482	1	0	0	1	0	0	copy fasta	CCZ1B	chr7	6793937	6831275
CCZ1_chr7_5893733_5931550	0/0	a0001	482	64	17	23	15	3	6	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	a0002	482	32	19	6	2	4	1	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	a0003	482	16	8	5	1	1	1	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	a0004	482	1	0	0	1	0	0	copy fasta	CCZ1	chr7	5893733	5931550
CCZ1_chr7_5893733_5931550	0/0	a0005	482	1	0	0	1	0	0	copy fasta	CCZ1	chr7	5893733	5931550
CD101_chr1_116996760_117041552	0/0	a0000	0	1	0	0	0	0	1	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0001	1021	264	58	41	131	6	28	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/1	a0002	1021	52	6	19	14	6	6	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	1/0	a0003	1021	34	2	3	25	1	2	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0004	1021	14	0	0	14	0	0	copy fasta	CD101	chr1	116996760	117041552