JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CD101_chr1_116996760_117041552	0/0	a0005	1021	10	4	4	0	1	1	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0006	1021	7	7	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0007	1021	6	0	2	0	1	3	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0008	1021	5	0	4	0	1	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0009	1021	4	4	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0010	1021	3	3	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0011	1021	2	0	0	0	0	2	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0012	1021	2	0	0	2	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0013	1021	2	0	0	0	0	2	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0014	1021	2	2	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0015	1021	2	1	1	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0016	1021	2	2	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0017	1021	2	2	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0018	1021	1	1	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0019	1021	1	0	0	1	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0020	1021	1	0	0	1	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0021	1021	1	1	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0022	1021	1	1	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0023	1021	1	0	0	1	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0024	1021	1	1	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0025	1021	1	0	0	1	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0026	1021	1	1	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0027	1021	1	0	0	0	0	1	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0028	1021	1	1	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD101_chr1_116996760_117041552	0/0	a0029	1021	1	1	0	0	0	0	copy fasta	CD101	chr1	116996760	117041552
CD109_chr6_73691203_73833313	0/1	a0001	1445	104	20	18	59	3	3	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0002	1445	84	3	20	48	5	8	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	1/0	a0003	1445	55	20	7	20	0	7	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0004	1445	29	4	4	15	2	4	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0005	1445	26	6	2	13	2	3	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0006	1445	11	6	1	4	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0007	1445	9	0	0	7	0	2	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0008	1445	8	8	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0009	1445	3	3	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0010	1445	2	0	0	0	1	1	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0011	1445	2	2	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0012	1445	2	0	1	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0013	1445	2	2	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0014	1445	2	0	1	0	1	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0015	1445	2	0	0	0	2	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0016	1445	2	2	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0017	1445	1	0	0	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0018	1445	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0019	1445	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0020	1445	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0021	1445	1	0	1	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0022	1445	1	0	0	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0023	1445	1	0	0	0	0	1	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0024	1445	1	0	0	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0025	1445	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313