JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CD109_chr6_73691203_73833313	0/0	a0026	1445	1	0	0	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0027	1445	1	0	0	1	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0028	1445	1	0	0	0	0	1	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0029	1445	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0030	1445	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0031	1445	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0032	1445	1	0	1	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0033	1445	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0034	1445	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD109_chr6_73691203_73833313	0/0	a0035	1445	1	1	0	0	0	0	copy fasta	CD109	chr6	73691203	73833313
CD14_chr5_140626732_140638175	1/1	a0001	375	398	95	62	177	18	44	copy fasta	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	a0002	375	8	0	0	8	0	0	copy fasta	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	a0003	375	1	0	0	0	0	1	copy fasta	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	a0004	375	1	0	0	0	0	1	copy fasta	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	a0005	375	1	0	0	1	0	0	copy fasta	CD14	chr5	140626732	140638175
CD14_chr5_140626732_140638175	0/0	a0006	375	1	1	0	0	0	0	copy fasta	CD14	chr5	140626732	140638175
CD151_chr11_827952_843831	1/1	a0001	253	443	96	84	195	18	48	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	a0002	253	1	0	0	1	0	0	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	a0003	253	1	0	0	1	0	0	copy fasta	CD151	chr11	827952	843831
CD151_chr11_827952_843831	0/0	a0004	253	1	0	0	1	0	0	copy fasta	CD151	chr11	827952	843831
CD160_chr1_145714499_145744288	1/1	a0001	181	340	70	70	150	14	34	copy fasta	CD160	chr1	145714499	145744288
CD163L1_chr12_7349960_7449153	0/1	a0001	1453	250	37	56	123	13	20	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	a0002	1453	55	22	4	22	0	7	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	a0003	1453	21	8	1	9	0	3	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	a0004	1453	15	8	0	5	0	2	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	a0005	1453	7	6	0	0	1	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	a0006	1453	7	5	2	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	a0007	1455	5	0	0	5	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	1/0	a0008	1453	3	2	0	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	a0009	1453	2	1	1	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	a0010	1453	2	2	0	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	a0011	1453	2	0	1	0	0	1	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	a0012	1453	2	0	0	2	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	a0013	1453	1	1	0	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	a0014	1453	1	0	0	1	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	a0015	834	1	1	0	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	a0016	1453	1	0	0	0	0	1	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	a0017	1453	1	0	0	1	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	a0018	1453	1	0	0	1	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	a0019	1453	1	0	0	1	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	a0020	1453	1	0	0	0	0	1	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	a0021	1453	1	1	0	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	a0022	1453	1	0	0	1	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	a0023	1453	1	0	0	1	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	a0024	1453	1	0	0	0	0	1	copy fasta	CD163L1	chr12	7349960	7449153
CD163L1_chr12_7349960_7449153	0/0	a0025	1453	1	0	1	0	0	0	copy fasta	CD163L1	chr12	7349960	7449153
CD163_chr12_7465811_7508777	0/1	a0001	1121	254	49	39	137	6	22	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	1/0	a0002	1121	120	30	15	67	2	5	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	a0003	1121	36	2	16	5	4	9	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	a0004	1121	9	9	0	0	0	0	copy fasta	CD163	chr12	7465811	7508777