JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CD163_chr12_7465811_7508777	0/0	a0005	1121	4	3	1	0	0	0	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	a0006	1121	3	0	0	3	0	0	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	a0007	1121	1	1	0	0	0	0	copy fasta	CD163	chr12	7465811	7508777
CD163_chr12_7465811_7508777	0/0	a0008	1121	1	0	1	0	0	0	copy fasta	CD163	chr12	7465811	7508777
CD164L2_chr1_27374176_27388333	0/1	a0001	174	209	33	55	76	9	35	copy fasta	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	a0002	174	128	50	7	60	1	10	copy fasta	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	1/0	a0003	174	13	11	1	0	0	0	copy fasta	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	a0004	174	1	0	0	1	0	0	copy fasta	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	a0005	174	1	0	0	1	0	0	copy fasta	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	a0006	174	1	0	0	0	0	1	copy fasta	CD164L2	chr1	27374176	27388333
CD164L2_chr1_27374176_27388333	0/0	a0007	174	1	0	1	0	0	0	copy fasta	CD164L2	chr1	27374176	27388333
CD164_chr6_109361514_109387467	1/1	a0001	197	442	96	78	206	16	44	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	a0002	197	3	0	0	3	0	0	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	a0003	197	1	0	0	0	0	1	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	a0004	197	1	0	0	1	0	0	copy fasta	CD164	chr6	109361514	109387467
CD164_chr6_109361514_109387467	0/0	a0005	197	1	0	0	0	0	1	copy fasta	CD164	chr6	109361514	109387467
CD177_chr19_43348686_43368172	0/0	a0001	437	110	1	5	94	1	9	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0002	437	108	15	27	58	2	6	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0003	437	75	28	12	28	4	3	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0004	437	57	1	24	19	5	8	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0005	437	27	15	3	3	0	6	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/1	a0006	437	27	7	1	6	2	10	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0007	437	7	7	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0008	437	5	1	3	0	0	1	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0009	262	5	0	1	1	1	2	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0010	417	4	0	0	4	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0011	437	4	4	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0012	437	3	3	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0013	437	2	2	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0014	437	2	1	0	0	0	1	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0015	437	2	0	0	2	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0016	437	2	0	0	2	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0017	437	2	0	2	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0018	262	2	0	1	0	1	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0019	437	2	0	2	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0020	437	2	1	1	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0021	262	2	0	1	0	1	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0022	437	1	1	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0023	262	1	1	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0024	437	1	0	0	1	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0025	437	1	0	0	0	0	1	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0026	262	1	1	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0027	437	1	0	0	0	0	1	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0028	437	1	0	1	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0029	437	1	1	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0030	437	1	1	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0031	262	1	0	0	0	0	1	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	1/0	a0032	437	1	0	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0033	437	1	0	0	0	1	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0034	437	1	0	0	0	0	1	copy fasta	CD177	chr19	43348686	43368172