JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CD177_chr19_43348686_43368172	0/0	a0035	417	1	0	0	1	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0036	437	1	1	0	0	0	0	copy fasta	CD177	chr19	43348686	43368172
CD177_chr19_43348686_43368172	0/0	a0037	437	1	0	0	1	0	0	copy fasta	CD177	chr19	43348686	43368172
CD180_chr5_67174613_67201799	0/1	a0001	661	268	80	45	93	11	38	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	a0002	661	66	7	11	45	0	3	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	a0003	661	28	1	6	21	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	1/0	a0004	661	18	1	0	16	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	a0005	661	10	0	8	0	1	1	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	a0006	661	8	5	1	0	0	2	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	a0007	661	4	0	0	4	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	a0008	661	4	4	0	0	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	a0009	661	1	0	0	1	0	0	copy fasta	CD180	chr5	67174613	67201799
CD180_chr5_67174613_67201799	0/0	a0010	661	1	0	1	0	0	0	copy fasta	CD180	chr5	67174613	67201799
CD19_chr16_28926971_28944342	0/0	a0001	556	336	88	35	170	8	35	copy fasta	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	1/1	a0002	556	56	2	25	18	3	6	copy fasta	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	a0003	556	6	0	4	0	1	1	copy fasta	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	a0004	556	1	0	0	1	0	0	copy fasta	CD19	chr16	28926971	28944342
CD19_chr16_28926971_28944342	0/0	a0005	556	1	0	0	1	0	0	copy fasta	CD19	chr16	28926971	28944342
CD1A_chr1_158249424_158263269	1/1	a0001	327	356	85	68	152	13	36	copy fasta	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	a0002	327	83	4	5	64	1	9	copy fasta	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	a0003	327	5	5	0	0	0	0	copy fasta	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	a0004	327	1	0	1	0	0	0	copy fasta	CD1A	chr1	158249424	158263269
CD1A_chr1_158249424_158263269	0/0	a0005	327	1	0	0	0	0	1	copy fasta	CD1A	chr1	158249424	158263269
CD1B_chr1_158322955_158336531	1/1	a0001	333	436	96	72	211	11	44	copy fasta	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	a0002	333	2	0	2	0	0	0	copy fasta	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	a0003	333	1	0	0	1	0	0	copy fasta	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	a0004	333	1	1	0	0	0	0	copy fasta	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	a0005	333	1	0	0	0	1	0	copy fasta	CD1B	chr1	158322955	158336531
CD1B_chr1_158322955_158336531	0/0	a0006	333	1	1	0	0	0	0	copy fasta	CD1B	chr1	158322955	158336531
CD1C_chr1_158284923_158299774	1/1	a0001	333	412	74	71	203	16	46	copy fasta	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	a0002	333	21	18	1	0	0	2	copy fasta	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	a0003	333	12	0	0	12	0	0	copy fasta	CD1C	chr1	158284923	158299774
CD1C_chr1_158284923_158299774	0/0	a0004	333	1	0	0	1	0	0	copy fasta	CD1C	chr1	158284923	158299774
CD1D_chr1_158175895_158191427	1/1	a0001	335	426	89	69	210	14	42	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	a0002	335	2	0	0	0	0	2	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	a0003	335	1	1	0	0	0	0	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	a0004	136	1	0	0	1	0	0	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	a0005	155	1	1	0	0	0	0	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	a0006	335	1	1	0	0	0	0	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	a0007	335	1	0	0	1	0	0	copy fasta	CD1D	chr1	158175895	158191427
CD1D_chr1_158175895_158191427	0/0	a0008	335	1	0	1	0	0	0	copy fasta	CD1D	chr1	158175895	158191427
CD1E_chr1_158348894_158362553	0/0	a0001	388	249	60	33	125	7	24	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	1/1	a0002	388	158	7	37	85	7	20	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	a0003	388	11	11	0	0	0	0	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	a0004	388	7	7	0	0	0	0	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	a0005	388	5	5	0	0	0	0	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	a0006	388	2	0	0	0	0	2	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	a0007	388	1	0	0	1	0	0	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	a0008	388	1	0	0	1	0	0	copy fasta	CD1E	chr1	158348894	158362553
CD1E_chr1_158348894_158362553	0/0	a0009	388	1	1	0	0	0	0	copy fasta	CD1E	chr1	158348894	158362553