JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CD1E_chr1_158348894_158362553	0/0	a0010	350	1	1	0	0	0	0	copy fasta	CD1E	chr1	158348894	158362553
CD200R1L_chr3_112810711_112851864	1/0	a0001	250	249	22	38	159	8	21	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	a0002	250	96	51	15	18	1	11	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/1	a0003	185	49	13	14	9	5	7	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	a0004	250	11	7	1	0	0	3	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	a0005	250	1	1	0	0	0	0	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	a0006	250	1	0	0	1	0	0	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1L_chr3_112810711_112851864	0/0	a0007	250	1	0	0	1	0	0	copy fasta	CD200R1L	chr3	112810711	112851864
CD200R1_chr3_112916205_112980103	0/0	a0001	348	270	66	46	127	7	24	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	1/1	a0002	348	136	28	28	60	4	14	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	a0003	348	6	0	0	6	0	0	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	a0004	348	1	0	0	1	0	0	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	a0005	170	1	0	0	1	0	0	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	a0006	348	1	0	0	1	0	0	copy fasta	CD200R1	chr3	112916205	112980103
CD200R1_chr3_112916205_112980103	0/0	a0007	348	1	0	0	0	1	0	copy fasta	CD200R1	chr3	112916205	112980103
CD200_chr3_112328156_112367812	0/1	a0001	269	272	77	45	116	11	22	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	a0002	269	73	10	19	31	4	9	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	1/0	a0003	269	61	9	12	29	1	9	copy fasta	CD200	chr3	112328156	112367812
CD200_chr3_112328156_112367812	0/0	a0004	269	2	0	2	0	0	0	copy fasta	CD200	chr3	112328156	112367812
CD207_chr2_70825211_70840816	0/1	a0001	328	134	17	21	78	5	12	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	1/0	a0002	328	99	28	16	42	1	11	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	a0003	328	50	1	6	41	0	2	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	a0004	328	38	19	5	11	1	2	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	a0005	328	34	13	10	7	2	2	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	a0006	328	23	0	0	20	0	3	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	a0007	328	21	2	12	1	2	4	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	a0008	23	8	0	0	8	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	a0009	328	8	2	0	1	2	3	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	a0010	328	7	7	0	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	a0011	328	4	0	3	0	1	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	a0012	188	4	0	0	4	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	a0013	328	3	1	0	0	0	2	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	a0014	188	2	0	0	2	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	a0015	328	2	0	2	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	a0016	328	1	0	0	0	0	1	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	a0017	328	1	1	0	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	a0018	328	1	1	0	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	a0019	328	1	1	0	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	a0020	328	1	1	0	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	a0021	328	1	0	1	0	0	0	copy fasta	CD207	chr2	70825211	70840816
CD207_chr2_70825211_70840816	0/0	a0022	328	1	0	0	1	0	0	copy fasta	CD207	chr2	70825211	70840816
CD209_chr19_7734993_7752534	1/1	a0001	404	417	72	76	205	16	46	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	a0002	404	9	8	1	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	a0003	404	8	7	1	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	a0004	404	4	4	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	a0005	381	3	2	1	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	a0006	404	2	0	0	2	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	a0007	404	1	0	1	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	a0008	404	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	a0009	404	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534