JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CD209_chr19_7734993_7752534	0/0	a0010	404	1	0	0	0	0	1	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	a0011	427	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	a0012	450	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	a0013	404	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	a0014	404	1	1	0	0	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	a0015	404	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	a0016	335	1	0	0	1	0	0	copy fasta	CD209	chr19	7734993	7752534
CD209_chr19_7734993_7752534	0/0	a0017	404	1	0	0	0	0	1	copy fasta	CD209	chr19	7734993	7752534
CD226_chr18_69848274_69952873	1/0	a0001	336	134	55	24	34	3	17	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/1	a0002	336	106	26	34	29	1	15	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	a0003	336	12	4	4	2	0	2	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	a0004	336	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	a0005	336	1	0	0	1	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	a0006	336	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD226_chr18_69848274_69952873	0/0	a0007	336	1	1	0	0	0	0	copy fasta	CD226	chr18	69848274	69952873
CD22_chr19_35324187_35352361	1/1	a0001	847	363	81	72	152	16	40	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	a0002	847	65	7	10	44	0	4	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	a0003	847	6	5	1	0	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	a0004	847	5	0	0	5	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	a0005	847	4	4	0	0	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	a0006	847	3	0	0	3	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	a0007	847	2	2	0	0	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	a0008	847	1	0	0	1	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	a0009	847	1	0	0	1	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	a0010	847	1	0	0	1	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	a0011	847	1	0	0	1	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	a0012	847	1	0	0	1	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	a0013	847	1	1	0	0	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	a0014	847	1	0	1	0	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	a0015	847	1	0	0	1	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	a0016	847	1	0	0	1	0	0	copy fasta	CD22	chr19	35324187	35352361
CD22_chr19_35324187_35352361	0/0	a0017	847	1	0	0	1	0	0	copy fasta	CD22	chr19	35324187	35352361
CD244_chr1_160825160_160867887	1/0	a0001	365	365	71	51	187	16	39	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	a0002	365	21	19	0	0	0	2	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	a0003	365	5	1	4	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	a0004	365	4	0	0	4	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	a0005	365	2	2	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	a0006	365	1	0	0	0	0	1	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	a0007	365	1	0	1	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	a0008	365	1	1	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	a0009	365	1	1	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	a0010	365	1	0	0	1	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/1	a0011	365	1	0	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD244_chr1_160825160_160867887	0/0	a0012	365	1	1	0	0	0	0	copy fasta	CD244	chr1	160825160	160867887
CD247_chr1_167425640_167523529	1/1	a0001	164	369	94	70	151	16	36	copy fasta	CD247	chr1	167425640	167523529
CD247_chr1_167425640_167523529	0/0	a0002	164	2	0	0	2	0	0	copy fasta	CD247	chr1	167425640	167523529
CD247_chr1_167425640_167523529	0/0	a0003	164	2	0	2	0	0	0	copy fasta	CD247	chr1	167425640	167523529
CD247_chr1_167425640_167523529	0/0	a0004	164	1	0	0	1	0	0	copy fasta	CD247	chr1	167425640	167523529
CD248_chr11_66309494_66322044	1/0	a0001	757	285	66	36	145	6	31	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/1	a0002	757	97	12	33	32	10	9	copy fasta	CD248	chr11	66309494	66322044