JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CD248_chr11_66309494_66322044	0/0	a0003	756	8	0	0	8	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	a0004	757	4	4	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	a0005	757	3	0	0	3	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	a0006	757	2	0	0	2	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	a0007	757	1	1	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	a0008	757	1	1	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	a0009	757	1	1	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	a0010	757	1	1	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	a0011	757	1	0	1	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	a0012	757	1	1	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	a0013	757	1	1	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	a0014	757	1	1	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	a0015	757	1	0	1	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	a0016	757	1	1	0	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	a0017	757	1	0	1	0	0	0	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	a0018	757	1	0	0	0	0	1	copy fasta	CD248	chr11	66309494	66322044
CD248_chr11_66309494_66322044	0/0	a0019	757	1	0	0	0	0	1	copy fasta	CD248	chr11	66309494	66322044
CD24_chr6_106964831_106979729	1/1	a0001	80	297	59	52	146	10	28	copy fasta	CD24	chr6	106964831	106979729
CD24_chr6_106964831_106979729	0/0	a0002	80	165	41	28	78	8	10	copy fasta	CD24	chr6	106964831	106979729
CD274_chr9_5445542_5475554	1/1	a0001	290	423	86	77	190	18	50	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	a0002	290	1	1	0	0	0	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	a0003	290	1	1	0	0	0	0	copy fasta	CD274	chr9	5445542	5475554
CD274_chr9_5445542_5475554	0/0	a0004	290	1	0	1	0	0	0	copy fasta	CD274	chr9	5445542	5475554
CD276_chr15_73679383_73719514	1/1	a0001	534	293	45	60	138	11	37	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	a0002	534	30	25	5	0	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	a0003	534	24	12	4	5	1	2	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	a0004	534	23	4	1	16	0	2	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	a0005	534	3	0	1	2	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	a0006	534	3	0	2	0	0	1	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	a0007	534	1	1	0	0	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	a0008	534	1	0	0	0	0	1	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	a0009	534	1	1	0	0	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	a0010	534	1	0	0	1	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	a0011	534	1	0	0	0	0	1	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	a0012	534	1	0	1	0	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	a0013	534	1	0	0	1	0	0	copy fasta	CD276	chr15	73679383	73719514
CD276_chr15_73679383_73719514	0/0	a0014	534	1	0	0	1	0	0	copy fasta	CD276	chr15	73679383	73719514
CD27_chr12_6439955_6456713	0/1	a0001	260	422	83	79	216	13	30	copy fasta	CD27	chr12	6439955	6456713
CD27_chr12_6439955_6456713	0/0	a0002	260	47	13	7	7	5	15	copy fasta	CD27	chr12	6439955	6456713
CD27_chr12_6439955_6456713	1/0	a0003	260	1	0	0	0	0	0	copy fasta	CD27	chr12	6439955	6456713
CD27_chr12_6439955_6456713	0/0	a0004	260	1	0	0	1	0	0	copy fasta	CD27	chr12	6439955	6456713
CD27_chr12_6439955_6456713	0/0	a0005	260	1	0	0	0	0	1	copy fasta	CD27	chr12	6439955	6456713
CD28_chr2_203701639_203743912	1/1	a0001	220	387	87	66	176	16	40	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	a0002	220	2	0	0	2	0	0	copy fasta	CD28	chr2	203701639	203743912
CD28_chr2_203701639_203743912	0/0	a0003	220	1	1	0	0	0	0	copy fasta	CD28	chr2	203701639	203743912
CD2AP_chr6_47472789_47632263	1/1	a0001	639	310	76	67	122	16	27	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	a0002	639	6	5	1	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	a0003	639	2	2	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	a0004	639	1	0	0	0	0	1	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	a0005	639	1	0	0	1	0	0	copy fasta	CD2AP	chr6	47472789	47632263