JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CD2AP_chr6_47472789_47632263	0/0	a0006	639	1	1	0	0	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2AP_chr6_47472789_47632263	0/0	a0007	639	1	0	0	1	0	0	copy fasta	CD2AP	chr6	47472789	47632263
CD2BP2_chr16_30345773_30360308	1/1	a0001	341	308	59	72	130	11	34	copy fasta	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	a0002	341	38	32	3	0	0	3	copy fasta	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	a0003	341	2	0	0	0	0	2	copy fasta	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	a0004	341	1	0	0	0	1	0	copy fasta	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	a0005	341	1	0	1	0	0	0	copy fasta	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	a0006	341	1	0	0	0	0	1	copy fasta	CD2BP2	chr16	30345773	30360308
CD2BP2_chr16_30345773_30360308	0/0	a0007	341	1	1	0	0	0	0	copy fasta	CD2BP2	chr16	30345773	30360308
CD2_chr1_116749430_116774229	1/1	a0001	351	292	29	51	151	14	45	copy fasta	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	a0002	351	163	65	19	75	2	2	copy fasta	CD2	chr1	116749430	116774229
CD2_chr1_116749430_116774229	0/0	a0003	351	1	0	0	0	0	1	copy fasta	CD2	chr1	116749430	116774229
CD300A_chr17_74461634_74489794	1/1	a0001	299	312	26	59	172	14	39	copy fasta	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	a0002	299	107	42	20	33	4	8	copy fasta	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	a0003	299	2	0	0	2	0	0	copy fasta	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	a0004	110	1	0	1	0	0	0	copy fasta	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	a0005	299	1	0	0	0	0	1	copy fasta	CD300A	chr17	74461634	74489794
CD300A_chr17_74461634_74489794	0/0	a0006	299	1	0	0	1	0	0	copy fasta	CD300A	chr17	74461634	74489794
CD300C_chr17_74536073_74551115	1/1	a0001	224	368	69	73	167	17	40	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	a0002	224	27	22	3	0	0	2	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	a0003	117	3	0	0	2	1	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	a0004	224	2	1	1	0	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	a0005	224	2	2	0	0	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	a0006	80	1	0	0	1	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	a0007	224	1	0	0	1	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	a0008	224	1	0	1	0	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	a0009	224	1	0	0	1	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	a0010	224	1	0	0	1	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300C_chr17_74536073_74551115	0/0	a0011	224	1	0	0	1	0	0	copy fasta	CD300C	chr17	74536073	74551115
CD300E_chr17_74604885_74628738	1/0	a0001	205	199	25	33	126	3	11	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	a0002	205	175	51	22	76	8	18	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/1	a0003	205	65	12	22	12	7	11	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	a0004	205	5	4	1	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	a0005	205	2	1	1	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	a0006	205	1	0	0	1	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	a0007	205	1	0	1	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	a0008	205	1	1	0	0	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300E_chr17_74604885_74628738	0/0	a0009	205	1	0	0	1	0	0	copy fasta	CD300E	chr17	74604885	74628738
CD300LB_chr17_74516174_74536475	1/1	a0001	201	402	85	74	178	18	45	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	a0002	201	1	1	0	0	0	0	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	a0003	201	1	0	0	0	0	1	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	a0004	201	1	0	0	1	0	0	copy fasta	CD300LB	chr17	74516174	74536475
CD300LB_chr17_74516174_74536475	0/0	a0005	201	1	0	0	1	0	0	copy fasta	CD300LB	chr17	74516174	74536475
CD300LD_chr17_74574365_74597283	1/0	a0001	194	148	15	30	77	9	16	copy fasta	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/1	a0002	194	143	20	32	64	7	19	copy fasta	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	a0003	194	142	50	16	63	2	11	copy fasta	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	a0004	194	5	5	0	0	0	0	copy fasta	CD300LD	chr17	74574365	74597283
CD300LD_chr17_74574365_74597283	0/0	a0005	194	2	0	0	2	0	0	copy fasta	CD300LD	chr17	74574365	74597283
CD300LF_chr17_74689317_74717923	0/1	a0001	290	174	10	31	96	11	25	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	1/0	a0002	290	110	38	15	44	2	10	copy fasta	CD300LF	chr17	74689317	74717923