JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CD300LF_chr17_74689317_74717923	0/0	a0003	290	54	25	18	6	1	4	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	a0004	290	38	5	4	26	1	2	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	a0005	290	38	14	5	19	0	0	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	a0006	290	7	0	5	0	1	1	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	a0007	290	2	2	0	0	0	0	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	a0008	290	2	0	0	2	0	0	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	a0009	290	2	0	0	2	0	0	copy fasta	CD300LF	chr17	74689317	74717923
CD300LF_chr17_74689317_74717923	0/0	a0010	290	1	0	0	1	0	0	copy fasta	CD300LF	chr17	74689317	74717923
CD300LG_chr17_43842176_43868639	1/1	a0001	332	216	41	53	81	9	30	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	a0002	332	69	44	17	0	4	4	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	a0003	332	6	6	0	0	0	0	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	a0004	332	4	0	2	0	0	2	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	a0005	332	2	2	0	0	0	0	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	a0006	332	1	1	0	0	0	0	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	a0007	332	1	0	0	1	0	0	copy fasta	CD300LG	chr17	43842176	43868639
CD300LG_chr17_43842176_43868639	0/0	a0008	332	1	0	0	0	1	0	copy fasta	CD300LG	chr17	43842176	43868639
CD302_chr2_159763628_159803208	1/1	a0001	232	396	74	65	207	14	34	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	a0002	232	15	12	3	0	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	a0003	232	1	1	0	0	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	a0004	232	1	0	0	1	0	0	copy fasta	CD302	chr2	159763628	159803208
CD302_chr2_159763628_159803208	0/0	a0005	232	1	1	0	0	0	0	copy fasta	CD302	chr2	159763628	159803208
CD320_chr19_8297127_8313358	1/1	a0001	282	321	49	67	159	14	30	copy fasta	CD320	chr19	8297127	8313358
CD320_chr19_8297127_8313358	0/0	a0002	282	47	30	7	9	0	1	copy fasta	CD320	chr19	8297127	8313358
CD320_chr19_8297127_8313358	0/0	a0003	282	10	10	0	0	0	0	copy fasta	CD320	chr19	8297127	8313358
CD320_chr19_8297127_8313358	0/0	a0004	282	7	0	0	0	0	7	copy fasta	CD320	chr19	8297127	8313358
CD320_chr19_8297127_8313358	0/0	a0005	282	3	3	0	0	0	0	copy fasta	CD320	chr19	8297127	8313358
CD320_chr19_8297127_8313358	0/0	a0006	282	2	0	0	0	2	0	copy fasta	CD320	chr19	8297127	8313358
CD33_chr19_51220080_51245016	1/0	a0001	364	157	23	17	84	5	27	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	a0002	364	68	23	14	15	9	7	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	a0003	364	64	4	20	35	1	4	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/1	a0004	364	21	3	15	0	1	1	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	a0005	364	11	11	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	a0006	364	8	8	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	a0007	364	6	6	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	a0008	364	5	2	1	0	0	2	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	a0009	274	4	0	0	4	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	a0010	364	3	3	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	a0011	364	2	2	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	a0012	364	2	2	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	a0013	364	2	1	1	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	a0014	274	2	0	0	2	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	a0015	364	1	0	1	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	a0016	364	1	1	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	a0017	364	1	0	1	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	a0018	364	1	1	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	a0019	364	1	1	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	a0020	364	1	1	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	a0021	364	1	1	0	0	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	a0022	364	1	0	0	1	0	0	copy fasta	CD33	chr19	51220080	51245016
CD33_chr19_51220080_51245016	0/0	a0023	364	1	0	0	1	0	0	copy fasta	CD33	chr19	51220080	51245016