JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CD44_chr11_35134171_35237402	0/0	a0007	742	1	0	1	0	0	0	copy fasta	CD44	chr11	35134171	35237402
CD44_chr11_35134171_35237402	0/0	a0008	56	1	0	0	1	0	0	copy fasta	CD44	chr11	35134171	35237402
CD46_chr1_207747054_207800504	1/1	a0001	377	367	86	77	149	15	38	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	a0002	377	6	0	1	5	0	0	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	a0003	377	2	2	0	0	0	0	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	a0004	377	1	1	0	0	0	0	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	a0005	377	1	0	0	1	0	0	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	a0006	377	1	0	0	1	0	0	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	a0007	377	1	0	0	0	1	0	copy fasta	CD46	chr1	207747054	207800504
CD46_chr1_207747054_207800504	0/0	a0008	377	1	1	0	0	0	0	copy fasta	CD46	chr1	207747054	207800504
CD47_chr3_108038091_108096031	1/1	a0001	323	386	98	66	162	16	42	copy fasta	CD47	chr3	108038091	108096031
CD48_chr1_160673746_160716822	1/1	a0001	243	395	85	73	180	14	41	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	a0002	243	32	7	6	14	2	3	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	a0003	243	6	0	0	6	0	0	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	a0004	243	2	2	0	0	0	0	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	a0005	243	2	0	2	0	0	0	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	a0006	243	2	0	0	0	0	2	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	a0007	243	2	1	1	0	0	0	copy fasta	CD48	chr1	160673746	160716822
CD48_chr1_160673746_160716822	0/0	a0008	243	1	1	0	0	0	0	copy fasta	CD48	chr1	160673746	160716822
CD4_chr12_6784528_6825799	1/1	a0001	458	383	66	67	190	16	42	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	a0002	458	40	24	2	13	0	1	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	a0003	458	7	4	3	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	a0004	458	3	0	0	3	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	a0005	458	2	0	0	2	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	a0006	458	1	1	0	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	a0007	458	1	1	0	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	a0008	458	1	1	0	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	a0009	458	1	1	0	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	a0010	458	1	1	0	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	a0011	458	1	1	0	0	0	0	copy fasta	CD4	chr12	6784528	6825799
CD4_chr12_6784528_6825799	0/0	a0012	458	1	0	0	0	0	1	copy fasta	CD4	chr12	6784528	6825799
CD52_chr1_26312958_26325523	0/1	a0001	61	229	61	52	84	10	21	copy fasta	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	1/0	a0002	61	154	28	10	90	8	17	copy fasta	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	a0003	61	20	0	14	6	0	0	copy fasta	CD52	chr1	26312958	26325523
CD52_chr1_26312958_26325523	0/0	a0004	61	1	1	0	0	0	0	copy fasta	CD52	chr1	26312958	26325523
CD53_chr1_110868148_110904922	1/1	a0001	219	440	93	70	209	16	50	copy fasta	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	a0002	219	1	0	0	1	0	0	copy fasta	CD53	chr1	110868148	110904922
CD53_chr1_110868148_110904922	0/0	a0003	219	1	1	0	0	0	0	copy fasta	CD53	chr1	110868148	110904922
CD55_chr1_207316678_207365966	1/1	a0001	381	348	82	62	156	12	34	copy fasta	CD55	chr1	207316678	207365966
CD55_chr1_207316678_207365966	0/0	a0002	381	3	3	0	0	0	0	copy fasta	CD55	chr1	207316678	207365966
CD55_chr1_207316678_207365966	0/0	a0003	385	1	0	0	1	0	0	copy fasta	CD55	chr1	207316678	207365966
CD55_chr1_207316678_207365966	0/0	a0004	381	1	1	0	0	0	0	copy fasta	CD55	chr1	207316678	207365966
CD55_chr1_207316678_207365966	0/0	a0005	381	1	1	0	0	0	0	copy fasta	CD55	chr1	207316678	207365966
CD55_chr1_207316678_207365966	0/0	a0006	381	1	1	0	0	0	0	copy fasta	CD55	chr1	207316678	207365966
CD55_chr1_207316678_207365966	0/0	a0007	381	1	0	0	1	0	0	copy fasta	CD55	chr1	207316678	207365966
CD58_chr1_116509534_116576026	1/1	a0001	250	267	69	59	93	6	38	copy fasta	CD58	chr1	116509534	116576026
CD58_chr1_116509534_116576026	0/0	a0002	250	16	9	1	6	0	0	copy fasta	CD58	chr1	116509534	116576026
CD58_chr1_116509534_116576026	0/0	a0003	250	4	4	0	0	0	0	copy fasta	CD58	chr1	116509534	116576026
CD58_chr1_116509534_116576026	0/0	a0004	250	1	0	0	1	0	0	copy fasta	CD58	chr1	116509534	116576026
CD59_chr11_33698010_33741423	1/1	a0001	128	380	84	62	170	14	48	copy fasta	CD59	chr11	33698010	33741423