JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CD5L_chr1_157825911_157846808	1/1	a0001	347	363	79	62	171	16	33	copy fasta	CD5L	chr1	157825911	157846808
CD5L_chr1_157825911_157846808	0/0	a0002	347	60	15	12	32	0	1	copy fasta	CD5L	chr1	157825911	157846808
CD5L_chr1_157825911_157846808	0/0	a0003	347	2	0	2	0	0	0	copy fasta	CD5L	chr1	157825911	157846808
CD5L_chr1_157825911_157846808	0/0	a0004	347	2	2	0	0	0	0	copy fasta	CD5L	chr1	157825911	157846808
CD5L_chr1_157825911_157846808	0/0	a0005	347	1	0	0	1	0	0	copy fasta	CD5L	chr1	157825911	157846808
CD5_chr11_61097489_61132852	0/1	a0001	495	105	22	27	32	8	15	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	a0002	495	58	30	22	0	4	2	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	a0003	495	40	21	5	7	3	4	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	1/0	a0004	495	10	0	3	0	3	3	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	a0005	495	9	6	2	1	0	0	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	a0006	495	7	2	4	0	0	1	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	a0007	495	7	3	1	0	0	3	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	a0008	495	3	2	0	1	0	0	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	a0009	495	1	1	0	0	0	0	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	a0010	495	1	1	0	0	0	0	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	a0011	495	1	1	0	0	0	0	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	a0012	495	1	0	0	1	0	0	copy fasta	CD5	chr11	61097489	61132852
CD5_chr11_61097489_61132852	0/0	a0013	495	1	1	0	0	0	0	copy fasta	CD5	chr11	61097489	61132852
CD63_chr12_55720323_55734009	1/1	a0001	238	417	96	74	190	13	42	copy fasta	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	a0002	238	2	0	0	2	0	0	copy fasta	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	a0003	238	1	0	0	1	0	0	copy fasta	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	a0004	238	1	0	0	0	0	1	copy fasta	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	a0005	238	1	0	0	0	0	1	copy fasta	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	a0006	238	1	0	0	0	1	0	copy fasta	CD63	chr12	55720323	55734009
CD63_chr12_55720323_55734009	0/0	a0007	238	1	0	0	1	0	0	copy fasta	CD63	chr12	55720323	55734009
CD68_chr17_7574638_7587111	1/1	a0001	354	366	78	69	170	15	32	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	a0002	354	32	3	4	19	2	4	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	a0003	354	25	9	4	10	0	2	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	a0004	354	4	1	2	0	1	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	a0005	354	4	4	0	0	0	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	a0006	354	1	1	0	0	0	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	a0007	354	1	0	0	1	0	0	copy fasta	CD68	chr17	7574638	7587111
CD68_chr17_7574638_7587111	0/0	a0008	354	1	0	1	0	0	0	copy fasta	CD68	chr17	7574638	7587111
CD69_chr12_9747486_9765901	1/1	a0001	199	444	91	82	209	16	44	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	a0002	199	2	0	0	2	0	0	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	a0003	199	1	1	0	0	0	0	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	a0004	199	1	1	0	0	0	0	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	a0005	199	1	0	0	1	0	0	copy fasta	CD69	chr12	9747486	9765901
CD69_chr12_9747486_9765901	0/0	a0006	199	1	1	0	0	0	0	copy fasta	CD69	chr12	9747486	9765901
CD6_chr11_60966680_61025377	1/0	a0001	668	112	30	17	48	6	10	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	a0002	668	90	46	18	17	1	8	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	a0003	668	31	6	1	17	0	7	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/1	a0004	668	27	4	14	0	3	5	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	a0005	668	21	1	12	3	1	4	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	a0006	668	8	0	0	6	0	2	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	a0007	668	5	1	2	0	0	2	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	a0008	668	3	0	0	3	0	0	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	a0009	668	1	0	0	0	0	1	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	a0010	668	1	0	0	0	0	1	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	a0011	668	1	1	0	0	0	0	copy fasta	CD6	chr11	60966680	61025377