JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CD6_chr11_60966680_61025377	0/0	a0012	668	1	1	0	0	0	0	copy fasta	CD6	chr11	60966680	61025377
CD6_chr11_60966680_61025377	0/0	a0013	668	1	0	0	0	1	0	copy fasta	CD6	chr11	60966680	61025377
CD70_chr19_6580839_6596150	1/1	a0001	193	454	97	82	208	18	47	copy fasta	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	a0002	193	1	1	0	0	0	0	copy fasta	CD70	chr19	6580839	6596150
CD70_chr19_6580839_6596150	0/0	a0003	193	1	0	0	0	0	1	copy fasta	CD70	chr19	6580839	6596150
CD72_chr9_35604982_35623413	1/1	a0001	359	361	71	66	164	13	45	copy fasta	CD72	chr9	35604982	35623413
CD72_chr9_35604982_35623413	0/0	a0002	359	24	19	1	0	1	3	copy fasta	CD72	chr9	35604982	35623413
CD72_chr9_35604982_35623413	0/0	a0003	359	2	0	0	2	0	0	copy fasta	CD72	chr9	35604982	35623413
CD72_chr9_35604982_35623413	0/0	a0004	359	1	0	1	0	0	0	copy fasta	CD72	chr9	35604982	35623413
CD72_chr9_35604982_35623413	0/0	a0005	359	1	1	0	0	0	0	copy fasta	CD72	chr9	35604982	35623413
CD72_chr9_35604982_35623413	0/0	a0006	359	1	1	0	0	0	0	copy fasta	CD72	chr9	35604982	35623413
CD74_chr5_150396639_150417910	1/1	a0001	296	404	95	78	167	16	46	copy fasta	CD74	chr5	150396639	150417910
CD74_chr5_150396639_150417910	0/0	a0002	296	2	2	0	0	0	0	copy fasta	CD74	chr5	150396639	150417910
CD74_chr5_150396639_150417910	0/0	a0003	296	1	0	0	1	0	0	copy fasta	CD74	chr5	150396639	150417910
CD74_chr5_150396639_150417910	0/0	a0004	296	1	1	0	0	0	0	copy fasta	CD74	chr5	150396639	150417910
CD79A_chr19_41872279_41886372	1/1	a0001	226	384	78	61	191	14	38	copy fasta	CD79A	chr19	41872279	41886372
CD79A_chr19_41872279_41886372	0/0	a0002	226	2	0	2	0	0	0	copy fasta	CD79A	chr19	41872279	41886372
CD79A_chr19_41872279_41886372	0/0	a0003	226	2	0	2	0	0	0	copy fasta	CD79A	chr19	41872279	41886372
CD79A_chr19_41872279_41886372	0/0	a0004	226	1	0	0	1	0	0	copy fasta	CD79A	chr19	41872279	41886372
CD79A_chr19_41872279_41886372	0/0	a0005	226	1	0	0	0	0	1	copy fasta	CD79A	chr19	41872279	41886372
CD79A_chr19_41872279_41886372	0/0	a0006	226	1	0	1	0	0	0	copy fasta	CD79A	chr19	41872279	41886372
CD79A_chr19_41872279_41886372	0/0	a0007	226	1	0	0	0	0	1	copy fasta	CD79A	chr19	41872279	41886372
CD79B_chr17_63923740_63937331	1/1	a0001	229	377	97	63	161	16	38	copy fasta	CD79B	chr17	63923740	63937331
CD79B_chr17_63923740_63937331	0/0	a0002	229	1	0	0	1	0	0	copy fasta	CD79B	chr17	63923740	63937331
CD79B_chr17_63923740_63937331	0/0	a0003	229	1	0	1	0	0	0	copy fasta	CD79B	chr17	63923740	63937331
CD79B_chr17_63923740_63937331	0/0	a0004	229	1	1	0	0	0	0	copy fasta	CD79B	chr17	63923740	63937331
CD7_chr17_82309873_82322608	1/1	a0001	240	396	89	73	173	18	41	copy fasta	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	a0002	231	6	0	6	0	0	0	copy fasta	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	a0003	240	4	4	0	0	0	0	copy fasta	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	a0004	240	4	0	1	0	0	3	copy fasta	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	a0005	240	2	2	0	0	0	0	copy fasta	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	a0006	240	2	0	0	2	0	0	copy fasta	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	a0007	240	1	1	0	0	0	0	copy fasta	CD7	chr17	82309873	82322608
CD7_chr17_82309873_82322608	0/0	a0008	240	1	0	0	1	0	0	copy fasta	CD7	chr17	82309873	82322608
CD80_chr3_119519293_119564614	1/1	a0001	288	413	86	79	186	14	46	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	a0002	288	4	4	0	0	0	0	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	a0003	288	3	3	0	0	0	0	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	a0004	288	2	0	2	0	0	0	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	a0005	288	1	1	0	0	0	0	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	a0006	288	1	0	0	1	0	0	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	a0007	288	1	0	1	0	0	0	copy fasta	CD80	chr3	119519293	119564614
CD80_chr3_119519293_119564614	0/0	a0008	288	1	0	0	1	0	0	copy fasta	CD80	chr3	119519293	119564614
CD81_chr11_2372310_2402397	1/1	a0001	236	387	91	74	164	14	42	copy fasta	CD81	chr11	2372310	2402397
CD81_chr11_2372310_2402397	0/0	a0002	236	1	1	0	0	0	0	copy fasta	CD81	chr11	2372310	2402397
CD82_chr11_44560663_44625358	1/1	a0001	267	190	60	28	80	9	11	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	a0002	267	181	32	52	59	7	31	copy fasta	CD82	chr11	44560663	44625358
CD82_chr11_44560663_44625358	0/0	a0003	267	1	0	0	1	0	0	copy fasta	CD82	chr11	44560663	44625358
CD83_chr6_14112772_14141906	1/1	a0001	205	422	91	79	184	16	50	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	a0002	205	9	2	1	6	0	0	copy fasta	CD83	chr6	14112772	14141906
CD83_chr6_14112772_14141906	0/0	a0003	205	6	6	0	0	0	0	copy fasta	CD83	chr6	14112772	14141906