JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CD83_chr6_14112772_14141906	0/0	a0004	205	1	1	0	0	0	0	copy fasta	CD83	chr6	14112772	14141906
CD84_chr1_160536098_160584496	1/1	a0001	328	373	93	77	156	12	33	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	a0002	328	2	2	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	a0003	328	1	0	1	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	a0004	328	1	0	0	0	0	1	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	a0005	328	1	1	0	0	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	a0006	328	1	0	0	1	0	0	copy fasta	CD84	chr1	160536098	160584496
CD84_chr1_160536098_160584496	0/0	a0007	328	1	0	0	1	0	0	copy fasta	CD84	chr1	160536098	160584496
CD86_chr3_122050362_122126136	0/1	a0001	329	147	47	37	38	7	17	copy fasta	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	a0002	329	116	11	17	63	4	21	copy fasta	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	1/0	a0003	329	38	27	6	0	1	3	copy fasta	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	a0004	329	1	1	0	0	0	0	copy fasta	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	a0005	329	1	0	0	1	0	0	copy fasta	CD86	chr3	122050362	122126136
CD86_chr3_122050362_122126136	0/0	a0006	329	1	0	0	0	0	1	copy fasta	CD86	chr3	122050362	122126136
CD8A_chr2_86779610_86795913	1/1	a0001	235	373	91	74	154	14	38	copy fasta	CD8A	chr2	86779610	86795913
CD8A_chr2_86779610_86795913	0/0	a0002	235	5	5	0	0	0	0	copy fasta	CD8A	chr2	86779610	86795913
CD8B2_chr2_106482364_106516095	0/0	a0001	210	258	49	51	115	6	37	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	1/1	a0002	210	83	44	20	1	10	6	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	a0003	210	7	0	6	0	0	1	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	a0004	210	1	0	1	0	0	0	copy fasta	CD8B2	chr2	106482364	106516095
CD8B2_chr2_106482364_106516095	0/0	a0005	210	1	1	0	0	0	0	copy fasta	CD8B2	chr2	106482364	106516095
CD8B_chr2_86833167_86866886	1/1	a0001	210	306	81	47	133	11	32	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	a0002	210	74	4	23	37	3	7	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	a0003	210	6	5	1	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	a0004	210	4	2	2	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	a0005	28	1	0	0	0	0	1	copy fasta	CD8B	chr2	86833167	86866886
CD8B_chr2_86833167_86866886	0/0	a0006	210	1	0	1	0	0	0	copy fasta	CD8B	chr2	86833167	86866886
CD93_chr20_23074360_23091324	0/0	a0001	652	208	33	41	105	9	20	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	1/1	a0002	652	147	49	31	49	3	13	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	a0003	652	29	6	0	23	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	a0004	652	5	2	0	3	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	a0005	652	3	3	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	a0006	652	3	0	0	3	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	a0007	652	2	2	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	a0008	652	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	a0009	652	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	a0010	652	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	a0011	652	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	a0012	652	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	a0013	652	1	1	0	0	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	a0014	652	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	a0015	652	1	0	0	1	0	0	copy fasta	CD93	chr20	23074360	23091324
CD93_chr20_23074360_23091324	0/0	a0016	652	1	0	0	0	0	1	copy fasta	CD93	chr20	23074360	23091324
CD96_chr3_111537197_111657372	1/1	a0001	569	271	71	51	101	14	32	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	a0002	569	21	1	1	17	0	2	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	a0003	569	3	3	0	0	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	a0004	569	1	0	0	1	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	a0005	569	1	0	0	1	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	a0006	569	1	0	1	0	0	0	copy fasta	CD96	chr3	111537197	111657372
CD96_chr3_111537197_111657372	0/0	a0007	569	1	1	0	0	0	0	copy fasta	CD96	chr3	111537197	111657372