JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CD96_chr3_111537197_111657372	0/0	a0008	569	1	0	1	0	0	0	copy fasta	CD96	chr3	111537197	111657372
CD99L2_chrX_150761336_150903668	1/1	a0001	262	210	61	34	78	13	22	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	a0002	262	1	1	0	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99L2_chrX_150761336_150903668	0/0	a0003	235	1	0	1	0	0	0	copy fasta	CD99L2	chrX	150761336	150903668
CD99_chrX_2686295_2746309	1/1	a0001	185	202	52	37	90	7	14	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	a0002	185	15	4	5	3	0	3	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	a0003	185	6	4	2	0	0	0	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	a0004	185	2	1	0	0	1	0	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	a0005	29	1	0	0	1	0	0	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	a0006	182	1	0	0	1	0	0	copy fasta	CD99	chrX	2686295	2746309
CD99_chrX_2686295_2746309	0/0	a0007	185	1	0	0	1	0	0	copy fasta	CD99	chrX	2686295	2746309
CD9_chr12_6195400_6243266	1/1	a0001	228	375	92	62	171	8	40	copy fasta	CD9	chr12	6195400	6243266
CD9_chr12_6195400_6243266	0/0	a0002	228	2	0	0	2	0	0	copy fasta	CD9	chr12	6195400	6243266
CD9_chr12_6195400_6243266	0/0	a0003	110	1	0	0	1	0	0	copy fasta	CD9	chr12	6195400	6243266
CDADC1_chr13_49242925_49298485	1/1	a0001	514	366	87	66	156	14	41	copy fasta	CDADC1	chr13	49242925	49298485
CDADC1_chr13_49242925_49298485	0/0	a0002	514	1	1	0	0	0	0	copy fasta	CDADC1	chr13	49242925	49298485
CDADC1_chr13_49242925_49298485	0/0	a0003	514	1	0	0	0	0	1	copy fasta	CDADC1	chr13	49242925	49298485
CDAN1_chr15_42718544_42742128	1/1	a0001	1227	156	8	32	86	10	18	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	a0002	1227	66	22	10	13	4	17	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	a0003	1227	52	18	1	32	0	1	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	a0004	1227	23	20	1	0	0	2	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	a0005	1227	14	13	1	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	a0006	1227	11	0	1	9	0	1	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	a0007	1227	8	8	0	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	a0008	1227	5	0	1	4	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	a0009	1227	2	0	2	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	a0010	1227	2	0	0	2	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	a0011	1227	1	1	0	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	a0012	1227	1	0	1	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	a0013	1227	1	0	0	1	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	a0014	1227	1	1	0	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	a0015	1227	1	1	0	0	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	a0016	1227	1	0	0	1	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	a0017	1227	1	0	0	1	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	a0018	1227	1	0	0	0	0	1	copy fasta	CDAN1	chr15	42718544	42742128
CDAN1_chr15_42718544_42742128	0/0	a0019	1227	1	0	0	1	0	0	copy fasta	CDAN1	chr15	42718544	42742128
CDA_chr1_20584097_20623903	1/0	a0001	146	339	87	52	155	10	34	copy fasta	CDA	chr1	20584097	20623903
CDA_chr1_20584097_20623903	0/1	a0002	146	74	7	21	31	4	10	copy fasta	CDA	chr1	20584097	20623903
CDA_chr1_20584097_20623903	0/0	a0003	146	4	0	0	4	0	0	copy fasta	CDA	chr1	20584097	20623903
CDA_chr1_20584097_20623903	0/0	a0004	146	1	0	1	0	0	0	copy fasta	CDA	chr1	20584097	20623903
CDC123_chr10_12191188_12255589	1/1	a0001	336	388	88	76	168	16	38	copy fasta	CDC123	chr10	12191188	12255589
CDC123_chr10_12191188_12255589	0/0	a0002	336	2	0	0	2	0	0	copy fasta	CDC123	chr10	12191188	12255589
CDC123_chr10_12191188_12255589	0/0	a0003	336	1	0	0	1	0	0	copy fasta	CDC123	chr10	12191188	12255589
CDC123_chr10_12191188_12255589	0/0	a0004	336	1	0	0	1	0	0	copy fasta	CDC123	chr10	12191188	12255589
CDC14A_chr1_100347506_100525277	1/1	a0001	594	304	84	53	119	10	36	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	a0002	594	1	0	0	1	0	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14A_chr1_100347506_100525277	0/0	a0003	594	1	0	1	0	0	0	copy fasta	CDC14A	chr1	100347506	100525277
CDC14B_chr9_96495113_96624843	1/1	a0001	498	209	68	50	51	12	26	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	a0002	498	8	7	1	0	0	0	copy fasta	CDC14B	chr9	96495113	96624843
CDC14B_chr9_96495113_96624843	0/0	a0003	498	2	1	1	0	0	0	copy fasta	CDC14B	chr9	96495113	96624843