JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CDC14B_chr9_96495113_96624843	0/0	a0004	498	1	0	0	1	0	0	copy fasta	CDC14B	chr9	96495113	96624843
CDC14C_chr7_48919547_48932454	0/1	a0001	447	278	47	35	156	8	31	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	1/0	a0002	447	151	37	37	58	8	10	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	a0003	447	10	3	2	1	0	4	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	a0004	75	7	0	1	6	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	a0005	447	3	1	2	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	a0006	447	3	2	1	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	a0007	447	3	0	0	0	0	3	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	a0008	447	1	1	0	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	a0009	447	1	1	0	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	a0010	447	1	0	0	1	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	a0011	447	1	0	0	1	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	a0012	447	1	0	0	1	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	a0013	447	1	1	0	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC14C_chr7_48919547_48932454	0/0	a0014	6	1	1	0	0	0	0	copy fasta	CDC14C	chr7	48919547	48932454
CDC16_chr13_114229897_114277723	1/1	a0001	620	380	88	72	162	16	40	copy fasta	CDC16	chr13	114229897	114277723
CDC20B_chr5_55107971_55178177	0/0	a0001	519	135	31	21	61	6	16	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	a0002	519	95	32	12	41	2	8	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/1	a0003	519	72	4	10	36	5	16	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	1/0	a0004	519	9	5	2	0	1	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	a0005	519	8	8	0	0	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	a0006	519	4	1	3	0	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	a0007	519	2	2	0	0	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	a0008	519	2	0	0	2	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	a0009	519	1	1	0	0	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	a0010	519	1	0	1	0	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20B_chr5_55107971_55178177	0/0	a0011	519	1	0	1	0	0	0	copy fasta	CDC20B	chr5	55107971	55178177
CDC20_chr1_43353981_43368203	1/1	a0001	499	363	94	69	149	12	37	copy fasta	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	a0002	499	2	0	0	0	0	2	copy fasta	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	a0003	499	1	0	0	1	0	0	copy fasta	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	a0004	499	1	0	1	0	0	0	copy fasta	CDC20	chr1	43353981	43368203
CDC20_chr1_43353981_43368203	0/0	a0005	499	1	0	0	0	0	1	copy fasta	CDC20	chr1	43353981	43368203
CDC23_chr5_138182650_138218323	1/1	a0001	597	387	89	78	159	16	43	copy fasta	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	a0002	597	1	0	0	0	0	1	copy fasta	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	a0003	597	1	0	0	1	0	0	copy fasta	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	a0004	597	1	1	0	0	0	0	copy fasta	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	a0005	597	1	0	0	1	0	0	copy fasta	CDC23	chr5	138182650	138218323
CDC23_chr5_138182650_138218323	0/0	a0006	597	1	0	0	1	0	0	copy fasta	CDC23	chr5	138182650	138218323
CDC25A_chr3_48152146_48193417	1/1	a0001	524	334	77	68	137	11	39	copy fasta	CDC25A	chr3	48152146	48193417
CDC25A_chr3_48152146_48193417	0/0	a0002	524	3	0	2	0	1	0	copy fasta	CDC25A	chr3	48152146	48193417
CDC25A_chr3_48152146_48193417	0/0	a0003	524	1	1	0	0	0	0	copy fasta	CDC25A	chr3	48152146	48193417
CDC25A_chr3_48152146_48193417	0/0	a0004	524	1	0	0	0	0	1	copy fasta	CDC25A	chr3	48152146	48193417
CDC25A_chr3_48152146_48193417	0/0	a0005	524	1	0	0	1	0	0	copy fasta	CDC25A	chr3	48152146	48193417
CDC25B_chr20_3791310_3811115	1/1	a0001	580	428	98	74	189	18	47	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	a0002	580	3	0	0	3	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	a0003	580	1	0	0	1	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	a0004	580	1	0	0	1	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	a0005	580	1	0	0	1	0	0	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	a0006	580	1	0	0	0	0	1	copy fasta	CDC25B	chr20	3791310	3811115
CDC25B_chr20_3791310_3811115	0/0	a0007	580	1	0	0	1	0	0	copy fasta	CDC25B	chr20	3791310	3811115