JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CDC25C_chr5_138280269_138336804	1/1	a0001	473	202	37	44	80	10	29	copy fasta	CDC25C	chr5	138280269	138336804
CDC25C_chr5_138280269_138336804	0/0	a0002	473	152	41	17	79	4	11	copy fasta	CDC25C	chr5	138280269	138336804
CDC25C_chr5_138280269_138336804	0/0	a0003	473	4	1	3	0	0	0	copy fasta	CDC25C	chr5	138280269	138336804
CDC25C_chr5_138280269_138336804	0/0	a0004	473	2	0	2	0	0	0	copy fasta	CDC25C	chr5	138280269	138336804
CDC25C_chr5_138280269_138336804	0/0	a0005	473	1	1	0	0	0	0	copy fasta	CDC25C	chr5	138280269	138336804
CDC25C_chr5_138280269_138336804	0/0	a0006	473	1	0	0	1	0	0	copy fasta	CDC25C	chr5	138280269	138336804
CDC26_chr9_113261992_113280572	1/1	a0001	85	432	88	76	206	16	44	copy fasta	CDC26	chr9	113261992	113280572
CDC27_chr17_47112703_47194295	1/1	a0001	824	357	88	72	138	14	43	copy fasta	CDC27	chr17	47112703	47194295
CDC27_chr17_47112703_47194295	0/0	a0002	824	1	0	0	0	0	1	copy fasta	CDC27	chr17	47112703	47194295
CDC34_chr19_526760_547087	1/1	a0001	236	327	86	62	131	14	32	copy fasta	CDC34	chr19	526760	547087
CDC34_chr19_526760_547087	0/0	a0002	236	1	0	0	1	0	0	copy fasta	CDC34	chr19	526760	547087
CDC37L1_chr9_4674569_4713399	1/1	a0001	337	419	94	70	201	10	42	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37L1_chr9_4674569_4713399	0/0	a0002	337	1	0	0	1	0	0	copy fasta	CDC37L1	chr9	4674569	4713399
CDC37_chr19_10386133_10408542	1/1	a0001	378	379	89	62	170	10	46	copy fasta	CDC37	chr19	10386133	10408542
CDC37_chr19_10386133_10408542	0/0	a0002	378	7	5	2	0	0	0	copy fasta	CDC37	chr19	10386133	10408542
CDC37_chr19_10386133_10408542	0/0	a0003	378	1	1	0	0	0	0	copy fasta	CDC37	chr19	10386133	10408542
CDC37_chr19_10386133_10408542	0/0	a0004	378	1	1	0	0	0	0	copy fasta	CDC37	chr19	10386133	10408542
CDC40_chr6_110175427_110237232	1/1	a0001	579	324	84	52	138	12	36	copy fasta	CDC40	chr6	110175427	110237232
CDC40_chr6_110175427_110237232	0/0	a0002	579	2	2	0	0	0	0	copy fasta	CDC40	chr6	110175427	110237232
CDC40_chr6_110175427_110237232	0/0	a0003	579	1	0	0	1	0	0	copy fasta	CDC40	chr6	110175427	110237232
CDC40_chr6_110175427_110237232	0/0	a0004	579	1	0	0	1	0	0	copy fasta	CDC40	chr6	110175427	110237232
CDC40_chr6_110175427_110237232	0/0	a0005	415	1	0	0	1	0	0	copy fasta	CDC40	chr6	110175427	110237232
CDC40_chr6_110175427_110237232	0/0	a0006	579	1	0	0	1	0	0	copy fasta	CDC40	chr6	110175427	110237232
CDC42BPA_chr1_226984865_227323492	0/0	a0001	1754	185	57	37	63	8	20	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	a0002	1754	92	11	23	44	5	9	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	1/1	a0003	1754	45	5	13	17	1	7	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	a0004	1754	7	0	0	6	0	1	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	a0005	1754	4	0	0	4	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	a0006	1754	3	3	0	0	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	a0007	1754	3	3	0	0	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	a0008	1754	3	3	0	0	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	a0009	1754	2	0	1	1	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	a0010	1754	2	2	0	0	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	a0011	1754	1	0	1	0	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	a0012	1754	1	0	0	0	0	1	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	a0013	1754	1	0	1	0	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	a0014	1754	1	0	0	1	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	a0015	1754	1	0	0	1	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPA_chr1_226984865_227323492	0/0	a0016	1754	1	0	0	1	0	0	copy fasta	CDC42BPA	chr1	226984865	227323492
CDC42BPB_chr14_102927380_103062549	1/1	a0001	1711	307	78	65	121	7	34	copy fasta	CDC42BPB	chr14	102927380	103062549
CDC42BPB_chr14_102927380_103062549	0/0	a0002	1711	2	1	1	0	0	0	copy fasta	CDC42BPB	chr14	102927380	103062549
CDC42BPB_chr14_102927380_103062549	0/0	a0003	1711	1	1	0	0	0	0	copy fasta	CDC42BPB	chr14	102927380	103062549
CDC42BPB_chr14_102927380_103062549	0/0	a0004	1711	1	0	0	0	0	1	copy fasta	CDC42BPB	chr14	102927380	103062549
CDC42BPB_chr14_102927380_103062549	0/0	a0005	1711	1	0	0	0	0	1	copy fasta	CDC42BPB	chr14	102927380	103062549
CDC42BPB_chr14_102927380_103062549	0/0	a0006	1711	1	0	0	1	0	0	copy fasta	CDC42BPB	chr14	102927380	103062549
CDC42BPB_chr14_102927380_103062549	0/0	a0007	1711	1	0	0	1	0	0	copy fasta	CDC42BPB	chr14	102927380	103062549
CDC42BPB_chr14_102927380_103062549	0/0	a0008	1711	1	1	0	0	0	0	copy fasta	CDC42BPB	chr14	102927380	103062549
CDC42BPB_chr14_102927380_103062549	0/0	a0009	1711	1	1	0	0	0	0	copy fasta	CDC42BPB	chr14	102927380	103062549
CDC42BPB_chr14_102927380_103062549	0/0	a0010	1711	1	0	0	0	1	0	copy fasta	CDC42BPB	chr14	102927380	103062549
CDC42BPB_chr14_102927380_103062549	0/0	a0011	1711	1	1	0	0	0	0	copy fasta	CDC42BPB	chr14	102927380	103062549