JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CDC42BPB_chr14_102927380_103062549	0/0	a0012	1711	1	1	0	0	0	0	copy fasta	CDC42BPB	chr14	102927380	103062549
CDC42BPB_chr14_102927380_103062549	0/0	a0013	1711	1	0	0	1	0	0	copy fasta	CDC42BPB	chr14	102927380	103062549
CDC42BPG_chr11_64818052_64849653	1/0	a0001	1551	257	65	26	136	5	24	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/1	a0002	1551	75	14	28	9	6	17	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0003	1551	20	0	0	20	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0004	1551	8	6	2	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0005	1551	4	0	2	0	1	1	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0006	1551	3	0	0	3	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0007	1551	3	0	0	3	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0008	1551	2	1	1	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0009	1551	2	0	0	2	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0010	1551	2	2	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0011	1551	2	0	0	2	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0012	1551	2	0	0	2	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0013	1551	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0014	226	1	0	0	1	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0015	1551	1	0	0	1	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0016	1551	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0017	1551	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0018	1551	1	0	0	0	0	1	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0019	1551	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0020	1551	1	0	0	1	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0021	1551	1	0	0	1	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0022	1551	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0023	1551	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0024	1551	1	0	0	1	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0025	1551	1	0	0	1	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0026	1551	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0027	1551	1	0	0	1	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0028	1551	1	0	0	1	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0029	1551	1	0	0	0	0	1	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0030	1551	1	0	0	0	0	1	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0031	1551	1	1	0	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0032	1551	1	0	1	0	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0033	1551	1	0	0	1	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0034	1551	1	0	0	1	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0035	1551	1	0	0	1	0	0	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42BPG_chr11_64818052_64849653	0/0	a0036	1551	1	0	0	0	0	1	copy fasta	CDC42BPG	chr11	64818052	64849653
CDC42EP1_chr22_37555480_37574405	1/0	a0001	391	278	73	37	135	7	25	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/1	a0002	384	155	10	32	78	11	23	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	a0003	391	8	8	0	0	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	a0004	391	2	2	0	0	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	a0005	391	1	0	0	1	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	a0006	391	1	1	0	0	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	a0007	391	1	0	0	1	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	a0008	384	1	0	0	1	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP1_chr22_37555480_37574405	0/0	a0009	384	1	0	1	0	0	0	copy fasta	CDC42EP1	chr22	37555480	37574405
CDC42EP2_chr11_65309866_65327417	1/1	a0001	210	334	92	64	118	18	40	copy fasta	CDC42EP2	chr11	65309866	65327417
CDC42EP2_chr11_65309866_65327417	0/0	a0002	210	4	4	0	0	0	0	copy fasta	CDC42EP2	chr11	65309866	65327417
CDC42EP3_chr2_37636944_37676642	1/1	a0001	254	429	97	78	194	16	42	copy fasta	CDC42EP3	chr2	37636944	37676642