JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CDC42EP3_chr2_37636944_37676642	0/0	a0002	254	1	1	0	0	0	0	copy fasta	CDC42EP3	chr2	37636944	37676642
CDC42EP4_chr17_73278624_73317001	1/1	a0001	356	397	91	77	165	16	46	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	a0002	356	3	1	0	0	0	2	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	a0003	356	2	2	0	0	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	a0004	356	2	0	0	2	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	a0005	356	1	0	0	1	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	a0006	356	1	0	0	1	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	a0007	356	1	0	1	0	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP4_chr17_73278624_73317001	0/0	a0008	356	1	0	0	1	0	0	copy fasta	CDC42EP4	chr17	73278624	73317001
CDC42EP5_chr19_54460026_54478296	0/1	a0001	148	395	93	74	167	13	47	copy fasta	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	a0002	148	12	3	3	6	0	0	copy fasta	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	a0003	148	9	0	0	9	0	0	copy fasta	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	a0004	148	2	0	0	2	0	0	copy fasta	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	a0005	148	1	0	0	0	1	0	copy fasta	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	a0006	148	1	0	1	0	0	0	copy fasta	CDC42EP5	chr19	54460026	54478296
CDC42EP5_chr19_54460026_54478296	0/0	a0007	148	1	0	0	0	0	1	copy fasta	CDC42EP5	chr19	54460026	54478296
CDC42SE1_chr1_151045985_151064622	1/1	a0001	79	342	94	58	134	14	40	copy fasta	CDC42SE1	chr1	151045985	151064622
CDC42SE2_chr5_131259053_131399672	1/1	a0001	84	256	76	62	76	10	30	copy fasta	CDC42SE2	chr5	131259053	131399672
CDC42_chr1_22047709_22106360	1/1	a0001	191	352	74	72	146	14	44	copy fasta	CDC42	chr1	22047709	22106360
CDC45_chr22_19474920_19525608	1/1	a0001	566	413	90	74	206	10	31	copy fasta	CDC45	chr22	19474920	19525608
CDC45_chr22_19474920_19525608	0/0	a0002	566	1	0	0	0	0	1	copy fasta	CDC45	chr22	19474920	19525608
CDC45_chr22_19474920_19525608	0/0	a0003	566	1	0	0	1	0	0	copy fasta	CDC45	chr22	19474920	19525608
CDC45_chr22_19474920_19525608	0/0	a0004	566	1	0	0	1	0	0	copy fasta	CDC45	chr22	19474920	19525608
CDC5L_chr6_44382706_44455425	1/1	a0001	802	351	83	54	176	8	28	copy fasta	CDC5L	chr6	44382706	44455425
CDC5L_chr6_44382706_44455425	0/0	a0002	802	1	1	0	0	0	0	copy fasta	CDC5L	chr6	44382706	44455425
CDC6_chr17_40282879_40309657	1/0	a0001	560	191	40	39	76	5	30	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/1	a0002	560	127	43	12	64	2	5	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	a0003	560	3	3	0	0	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	a0004	560	2	0	0	2	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	a0005	560	2	0	1	0	1	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	a0006	560	1	0	0	1	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	a0007	560	1	0	0	1	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	a0008	560	1	0	0	1	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	a0009	560	1	0	0	0	0	1	copy fasta	CDC6	chr17	40282879	40309657
CDC6_chr17_40282879_40309657	0/0	a0010	560	1	0	0	1	0	0	copy fasta	CDC6	chr17	40282879	40309657
CDC73_chr1_193117031_193259815	1/1	a0001	531	274	80	46	116	10	20	copy fasta	CDC73	chr1	193117031	193259815
CDC7_chr1_91495851_91530764	1/1	a0001	574	384	85	72	167	16	42	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	a0002	574	4	4	0	0	0	0	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	a0003	574	3	0	0	3	0	0	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	a0004	574	1	0	0	1	0	0	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	a0005	574	1	0	0	1	0	0	copy fasta	CDC7	chr1	91495851	91530764
CDC7_chr1_91495851_91530764	0/0	a0006	574	1	1	0	0	0	0	copy fasta	CDC7	chr1	91495851	91530764
CDCA2_chr8_25454233_25512911	1/1	a0001	1023	180	57	22	80	4	15	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	a0002	1023	68	11	19	31	1	6	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	a0003	1023	53	2	12	19	7	13	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	a0004	1023	4	3	1	0	0	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	a0005	1023	4	0	0	4	0	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	a0006	1023	4	4	0	0	0	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	a0007	1023	3	3	0	0	0	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	a0008	1023	3	3	0	0	0	0	copy fasta	CDCA2	chr8	25454233	25512911