JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CDCA2_chr8_25454233_25512911	0/0	a0009	1023	2	0	0	0	2	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	a0010	1023	1	1	0	0	0	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	a0011	1023	1	0	0	1	0	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	a0012	1023	1	0	0	0	1	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	a0013	1023	1	0	0	0	1	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA2_chr8_25454233_25512911	0/0	a0014	1023	1	0	0	1	0	0	copy fasta	CDCA2	chr8	25454233	25512911
CDCA3_chr12_6843828_6856286	1/1	a0001	268	394	86	72	172	16	46	copy fasta	CDCA3	chr12	6843828	6856286
CDCA3_chr12_6843828_6856286	0/0	a0002	268	1	0	0	1	0	0	copy fasta	CDCA3	chr12	6843828	6856286
CDCA3_chr12_6843828_6856286	0/0	a0003	268	1	0	0	1	0	0	copy fasta	CDCA3	chr12	6843828	6856286
CDCA4_chr14_105004573_105026083	1/1	a0001	241	410	83	71	198	12	44	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	a0002	241	1	0	1	0	0	0	copy fasta	CDCA4	chr14	105004573	105026083
CDCA4_chr14_105004573_105026083	0/0	a0003	241	1	1	0	0	0	0	copy fasta	CDCA4	chr14	105004573	105026083
CDCA5_chr11_65072453_65089040	1/1	a0001	252	355	93	76	130	18	36	copy fasta	CDCA5	chr11	65072453	65089040
CDCA5_chr11_65072453_65089040	0/0	a0002	252	5	5	0	0	0	0	copy fasta	CDCA5	chr11	65072453	65089040
CDCA7L_chr7_21895899_21950899	1/1	a0001	454	431	98	74	192	18	47	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7L_chr7_21895899_21950899	0/0	a0002	454	1	0	0	0	0	1	copy fasta	CDCA7L	chr7	21895899	21950899
CDCA7_chr2_173349872_173373997	1/1	a0001	450	459	96	82	217	16	46	copy fasta	CDCA7	chr2	173349872	173373997
CDCA7_chr2_173349872_173373997	0/0	a0002	450	1	0	0	1	0	0	copy fasta	CDCA7	chr2	173349872	173373997
CDCA8_chr1_37687516_37714719	1/1	a0001	280	410	97	72	180	16	43	copy fasta	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	a0002	275	1	1	0	0	0	0	copy fasta	CDCA8	chr1	37687516	37714719
CDCA8_chr1_37687516_37714719	0/0	a0003	280	1	0	0	0	0	1	copy fasta	CDCA8	chr1	37687516	37714719
CDCP1_chr3_45077277_45151378	0/1	a0001	836	284	36	55	149	10	33	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	a0002	836	66	31	17	6	3	9	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	1/0	a0003	836	12	9	2	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	a0004	836	9	9	0	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	a0005	836	4	0	1	0	1	2	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	a0006	836	2	0	0	0	0	2	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	a0007	836	2	2	0	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	a0008	71	1	1	0	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	a0009	836	1	1	0	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	a0010	836	1	1	0	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	a0011	836	1	0	1	0	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP1_chr3_45077277_45151378	0/0	a0012	836	1	0	0	1	0	0	copy fasta	CDCP1	chr3	45077277	45151378
CDCP2_chr1_54127687_54158000	0/1	a0001	540	313	60	55	150	13	34	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	a0002	540	56	1	14	28	4	9	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	1/0	a0003	540	24	16	3	2	0	2	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	a0004	540	23	10	9	1	1	2	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	a0005	540	2	2	0	0	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	a0006	540	2	2	0	0	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	a0007	540	2	2	0	0	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	a0008	540	1	0	0	1	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	a0009	540	1	1	0	0	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	a0010	540	1	1	0	0	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	a0011	540	1	0	0	1	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	a0012	540	1	1	0	0	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	a0013	540	1	0	0	1	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	a0014	540	1	0	0	1	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	a0015	540	1	0	0	0	0	1	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	a0016	540	1	0	0	1	0	0	copy fasta	CDCP2	chr1	54127687	54158000
CDCP2_chr1_54127687_54158000	0/0	a0017	540	1	0	1	0	0	0	copy fasta	CDCP2	chr1	54127687	54158000