JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CDH10_chr5_24482100_24649978	1/1	a0001	788	286	89	40	115	10	30	copy fasta	CDH10	chr5	24482100	24649978
CDH10_chr5_24482100_24649978	0/0	a0002	788	1	0	0	1	0	0	copy fasta	CDH10	chr5	24482100	24649978
CDH10_chr5_24482100_24649978	0/0	a0003	788	1	1	0	0	0	0	copy fasta	CDH10	chr5	24482100	24649978
CDH10_chr5_24482100_24649978	0/0	a0004	788	1	0	0	1	0	0	copy fasta	CDH10	chr5	24482100	24649978
CDH10_chr5_24482100_24649978	0/0	a0005	788	1	0	0	1	0	0	copy fasta	CDH10	chr5	24482100	24649978
CDH11_chr16_64938753_65127063	0/0	a0001	796	83	9	20	46	3	5	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	1/1	a0002	796	79	51	19	0	2	5	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	a0003	796	76	16	10	38	2	10	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	a0004	796	66	2	21	29	2	12	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	a0005	796	1	1	0	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	a0006	796	1	0	0	1	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	a0007	796	1	0	0	0	1	0	copy fasta	CDH11	chr16	64938753	65127063
CDH11_chr16_64938753_65127063	0/0	a0008	796	1	1	0	0	0	0	copy fasta	CDH11	chr16	64938753	65127063
CDH12_chr5_21745673_22858344	0/0	a0001	794	35	26	4	2	0	3	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	a0002	794	17	13	3	1	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	a0003	794	2	2	0	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	a0004	794	1	1	0	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	a0005	794	1	1	0	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	a0006	794	1	0	1	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	a0007	794	1	1	0	0	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	a0008	794	1	0	0	0	0	1	copy fasta	CDH12	chr5	21745673	22858344
CDH12_chr5_21745673_22858344	0/0	a0009	794	1	0	0	1	0	0	copy fasta	CDH12	chr5	21745673	22858344
CDH13_chr16_82621969_83805640	0/0	a0001	713	105	60	26	6	1	12	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	a0002	713	2	0	2	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	a0003	713	2	2	0	0	0	0	copy fasta	CDH13	chr16	82621969	83805640
CDH13_chr16_82621969_83805640	0/0	a0004	713	1	0	0	0	1	0	copy fasta	CDH13	chr16	82621969	83805640
CDH15_chr16_89166748_89200492	1/0	a0001	814	165	59	38	38	8	21	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/1	a0002	814	106	7	8	79	1	10	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	a0003	814	72	16	15	26	7	8	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	a0004	787	23	2	6	13	0	2	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	a0005	787	15	0	0	14	0	1	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	a0006	814	4	4	0	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	a0007	814	4	0	0	4	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	a0008	814	2	2	0	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	a0009	814	1	0	0	0	0	1	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	a0010	814	1	0	1	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	a0011	814	1	1	0	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	a0012	814	1	0	1	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	a0013	814	1	0	0	0	0	1	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	a0014	814	1	1	0	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	a0015	814	1	0	0	1	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	a0016	787	1	0	0	1	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	a0017	814	1	0	1	0	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	a0018	266	1	0	0	1	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	a0019	814	1	0	0	1	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	a0020	814	1	0	0	1	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	a0021	814	1	0	0	1	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	a0022	787	1	0	0	1	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH15_chr16_89166748_89200492	0/0	a0023	814	1	0	0	1	0	0	copy fasta	CDH15	chr16	89166748	89200492
CDH16_chr16_66903122_66923885	1/1	a0001	829	303	70	53	128	11	39	copy fasta	CDH16	chr16	66903122	66923885