JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CDH16_chr16_66903122_66923885	0/0	a0002	829	36	2	4	29	0	1	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	a0003	829	28	14	4	8	1	1	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	a0004	829	11	11	0	0	0	0	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	a0005	829	2	2	0	0	0	0	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	a0006	829	1	0	1	0	0	0	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	a0007	829	1	0	0	0	0	1	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	a0008	829	1	0	0	1	0	0	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	a0009	829	1	1	0	0	0	0	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	a0010	829	1	0	1	0	0	0	copy fasta	CDH16	chr16	66903122	66923885
CDH16_chr16_66903122_66923885	0/0	a0011	829	1	0	1	0	0	0	copy fasta	CDH16	chr16	66903122	66923885
CDH17_chr8_94122162_94213555	0/0	a0001	832	117	50	28	26	3	10	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/1	a0002	832	85	16	21	33	5	9	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	a0003	832	43	7	8	21	1	6	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	a0004	832	43	1	7	27	2	6	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	1/0	a0005	832	21	0	5	12	1	2	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	a0006	832	14	5	4	1	0	4	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	a0007	832	6	6	0	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	a0008	832	2	0	0	2	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	a0009	832	1	0	0	1	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	a0010	832	1	0	0	0	0	1	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	a0011	832	1	1	0	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	a0012	832	1	1	0	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	a0013	832	1	1	0	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	a0014	832	1	0	1	0	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH17_chr8_94122162_94213555	0/0	a0015	832	1	0	0	1	0	0	copy fasta	CDH17	chr8	94122162	94213555
CDH18_chr5_19466296_19993200	1/1	a0001	790	136	73	26	14	9	12	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	a0002	790	1	1	0	0	0	0	copy fasta	CDH18	chr5	19466296	19993200
CDH18_chr5_19466296_19993200	0/0	a0003	790	1	0	0	0	1	0	copy fasta	CDH18	chr5	19466296	19993200
CDH19_chr18_66496083_66609090	1/1	a0001	772	307	71	42	155	11	26	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	a0002	772	20	0	14	1	1	4	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	a0003	772	6	6	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	a0004	772	4	3	1	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	a0005	772	3	3	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	a0006	772	3	3	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	a0007	772	1	0	0	0	1	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	a0008	291	1	0	0	0	1	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	a0009	772	1	1	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	a0010	772	1	1	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	a0011	772	1	0	0	1	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	a0012	772	1	0	1	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	a0013	772	1	0	1	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	a0014	772	1	0	0	1	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	a0015	772	1	1	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	a0016	772	1	1	0	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH19_chr18_66496083_66609090	0/0	a0017	772	1	0	1	0	0	0	copy fasta	CDH19	chr18	66496083	66609090
CDH1_chr16_68732292_68840537	1/1	a0001	882	305	83	63	107	14	36	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	a0002	882	6	5	1	0	0	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	a0003	882	2	0	0	2	0	0	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	a0004	882	1	0	0	0	0	1	copy fasta	CDH1	chr16	68732292	68840537
CDH1_chr16_68732292_68840537	0/0	a0005	882	1	0	0	1	0	0	copy fasta	CDH1	chr16	68732292	68840537