Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ACTN3_chr11_66541903_66568334	0/0	a0005	901	4	0	0	4	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	a0006	901	2	0	2	0	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	a0007	901	2	2	0	0	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	1/0	a0008	901	2	0	1	0	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	a0009	901	2	1	1	0	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	a0010	58	1	0	0	1	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	a0011	576	1	0	0	0	0	1	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	a0012	901	1	0	0	1	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	a0013	576	1	0	0	0	0	1	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	a0014	901	1	1	0	0	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	a0015	901	1	0	0	0	0	1	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	a0016	901	1	0	0	1	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	a0017	901	1	0	0	1	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	a0018	901	1	1	0	0	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	a0019	901	1	1	0	0	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	a0020	576	1	0	0	1	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	a0021	901	1	0	0	1	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN3_chr11_66541903_66568334	0/0	a0022	901	1	0	0	1	0	0	copy fasta	ACTN3	chr11	66541903	66568334
ACTN4_chr19_38642649_38736589	1/1	a0001	911	307	70	65	116	16	38	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	a0002	911	3	3	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	a0003	911	2	2	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	a0004	911	1	0	1	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	a0005	911	1	1	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTR10_chr14_58195149_58240636	1/1	a0001	417	319	79	64	116	16	42	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	a0002	417	1	0	0	1	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	a0003	417	1	0	0	1	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	a0004	417	1	1	0	0	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR1A_chr10_102474229_102507712	1/1	a0001	376	384	90	72	170	10	40	copy fasta	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	a0002	376	3	0	0	3	0	0	copy fasta	ACTR1A	chr10	102474229	102507712
ACTR1A_chr10_102474229_102507712	0/0	a0003	376	1	0	0	1	0	0	copy fasta	ACTR1A	chr10	102474229	102507712
ACTR1B_chr2_97650939_97669044	1/1	a0001	376	337	59	61	165	13	37	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	a0002	376	50	39	8	1	1	1	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	a0003	376	9	0	5	0	4	0	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	a0004	376	1	0	0	0	0	1	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR1B_chr2_97650939_97669044	0/0	a0005	376	1	0	0	0	0	1	copy fasta	ACTR1B	chr2	97650939	97669044
ACTR2_chr2_65222831_65276253	1/1	a0001	394	326	98	64	110	16	36	copy fasta	ACTR2	chr2	65222831	65276253
ACTR3B_chr7_152754752_152860378	1/1	a0001	418	309	90	56	119	10	32	copy fasta	ACTR3B	chr7	152754752	152860378
ACTR3B_chr7_152754752_152860378	0/0	a0002	418	1	0	0	1	0	0	copy fasta	ACTR3B	chr7	152754752	152860378
ACTR3C_chr7_150242212_150328545	1/1	a0001	210	173	32	38	70	9	22	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	a0002	210	94	50	3	36	1	4	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	a0003	210	8	1	1	2	0	4	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	a0004	210	7	0	0	7	0	0	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	a0005	210	3	0	0	3	0	0	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	a0006	210	3	3	0	0	0	0	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	a0007	210	2	0	0	0	0	2	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	a0008	210	1	1	0	0	0	0	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	a0009	210	1	1	0	0	0	0	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	a0010	210	1	0	0	1	0	0	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3C_chr7_150242212_150328545	0/0	a0011	210	1	0	0	1	0	0	copy fasta	ACTR3C	chr7	150242212	150328545
ACTR3_chr2_113885089_113967596	1/1	a0001	418	389	87	62	188	12	38	copy fasta	ACTR3	chr2	113885089	113967596