JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CDH1_chr16_68732292_68840537	0/0	a0006	882	1	0	0	0	0	1	copy fasta	CDH1	chr16	68732292	68840537
CDH20_chr18_61328430_61560779	1/1	a0001	801	259	88	44	89	6	30	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	a0002	801	14	2	3	4	3	2	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	a0003	801	1	1	0	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	a0004	801	1	0	0	1	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	a0005	801	1	1	0	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	a0006	801	1	1	0	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	a0007	801	1	0	0	0	1	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	a0008	801	1	1	0	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH20_chr18_61328430_61560779	0/0	a0009	801	1	0	1	0	0	0	copy fasta	CDH20	chr18	61328430	61560779
CDH22_chr20_46168739_46313498	1/1	a0001	828	305	81	57	116	14	35	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/0	a0002	828	7	7	0	0	0	0	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/0	a0003	828	2	0	0	2	0	0	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/0	a0004	828	1	1	0	0	0	0	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/0	a0005	828	1	1	0	0	0	0	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/0	a0006	828	1	0	0	0	0	1	copy fasta	CDH22	chr20	46168739	46313498
CDH22_chr20_46168739_46313498	0/0	a0007	828	1	0	1	0	0	0	copy fasta	CDH22	chr20	46168739	46313498
CDH23_chr10_71391920_71820947	0/0	a0001	3354	13	4	4	0	0	5	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0002	3354	13	5	1	5	2	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0003	3354	11	2	3	5	1	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0004	3354	6	0	1	4	0	1	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/1	a0005	3354	5	0	0	1	0	3	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0006	3354	5	0	2	2	0	1	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0007	3354	4	0	4	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0008	3354	4	0	1	2	0	1	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	1/0	a0009	3354	4	0	3	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0010	3354	3	1	0	0	2	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0011	3354	3	0	0	3	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0012	3354	3	0	0	0	3	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0013	3354	3	0	0	3	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0014	3354	3	0	0	2	0	1	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0015	3354	3	0	0	3	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0016	3354	3	0	0	3	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0017	3354	3	1	1	1	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0018	3354	2	2	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0019	3354	2	1	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0020	3354	2	1	0	1	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0021	3354	2	1	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0022	3354	2	2	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0023	3354	2	0	2	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0024	3354	2	0	0	2	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0025	3354	2	0	1	1	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0026	3354	2	1	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0027	3354	2	0	2	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0028	3354	2	0	2	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0029	3354	2	0	1	1	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0030	3354	2	0	0	2	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0031	3354	2	2	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0032	3354	2	0	0	1	0	1	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0033	3354	2	0	1	1	0	0	copy fasta	CDH23	chr10	71391920	71820947