JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
CDH23_chr10_71391920_71820947	0/0	a0084	3354	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0085	3354	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0086	3354	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0087	3354	1	0	0	1	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0088	3354	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0089	3354	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0090	3354	1	0	0	0	0	1	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0091	3354	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0092	3354	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0093	3354	1	0	0	1	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0094	3354	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0095	3354	1	0	0	0	0	1	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0096	3354	1	0	0	1	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0097	3354	1	0	0	1	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0098	3354	1	0	0	0	0	1	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0099	3354	1	0	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0100	3354	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0101	3354	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0102	3354	1	0	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0103	3354	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0104	3354	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0105	3354	1	1	0	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH23_chr10_71391920_71820947	0/0	a0106	3354	1	0	1	0	0	0	copy fasta	CDH23	chr10	71391920	71820947
CDH24_chr14_23042067_23062520	1/1	a0001	781	396	88	74	181	12	39	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	a0002	781	6	2	0	3	0	1	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	a0003	781	5	0	5	0	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	a0004	781	3	3	0	0	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	a0005	781	2	2	0	0	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	a0006	781	1	0	1	0	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH24_chr14_23042067_23062520	0/0	a0007	781	1	1	0	0	0	0	copy fasta	CDH24	chr14	23042067	23062520
CDH26_chr20_59953423_60019529	1/1	a0001	832	251	55	48	109	11	26	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	a0002	832	8	8	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	a0003	832	4	4	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	a0004	832	3	3	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	a0005	832	3	3	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	a0006	832	3	1	0	0	0	2	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	a0007	832	3	0	0	0	2	1	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	a0008	832	2	0	1	1	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	a0009	832	2	0	2	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	a0010	832	2	0	0	2	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	a0011	832	1	1	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	a0012	832	1	1	0	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	a0013	832	1	0	0	1	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	a0014	832	1	0	0	0	1	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	a0015	832	1	0	0	1	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	a0016	832	1	0	0	0	0	1	copy fasta	CDH26	chr20	59953423	60019529
CDH26_chr20_59953423_60019529	0/0	a0017	832	1	0	1	0	0	0	copy fasta	CDH26	chr20	59953423	60019529
CDH2_chr18_27945966_28182130	1/0	a0001	906	236	77	45	67	13	33	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/1	a0002	906	24	4	2	16	0	1	copy fasta	CDH2	chr18	27945966	28182130
CDH2_chr18_27945966_28182130	0/0	a0003	906	4	0	1	1	0	2	copy fasta	CDH2	chr18	27945966	28182130